miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
|||||||||| |||||| ||||||||||| |||||| |||||||||| |||| |||||||
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgc 31
Query: 74 tcttatattaatttacagaggaagta 99
|||||||||| |||||||||| ||||
Sbjct: 30 tcttatattagtttacagagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||||| ||||||| |||| || | | ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 75 cttatattaatttacagaggaagtag 100
||||||||| ||||| |||| |||||
Sbjct: 65 cttatattagtttacggagggagtag 90
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||||||||||||| ||||||||| | || ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 75 cttatattaatttacagaggaagta 99
||||||||| ||||| |||| ||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| |||||| ||||||||||| |||||||||||| || |||| |||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| |||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| |||||| ||||||||||| ||||| | ||||||||| |||| |||| |||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 75 cttatattaatttacagaggaagta 99
||||||||| |||||||||||||||
Sbjct: 65 cttatattagtttacagaggaagta 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatga-ttaaacgct 74
|||| ||||||||||| ||||||||||||||||||| |||| || ||| ||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| ||||| |||| ||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| |||||||||| |||||||||||||||||| || | |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 75 cttatattaatttac 89
||||||||| |||||
Sbjct: 65 cttatattagtttac 79
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
||||||||||||||||| ||||||||||| |||||| |||||| || |||| ||| |||
Sbjct: 90 ctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgc 31
Query: 74 tcttatattaatttacagaggaagta 99
|||||||||| |||||||||| ||||
Sbjct: 30 tcttatattagtttacagagggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||||| |||||| |||| || |||| ||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 75 cttatattaatttacagaggaagtag 100
||||||||| |||||||||| |||||
Sbjct: 65 cttatattagtttacagagggagtag 90
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| ||||| |||||||||||||||||||| |||||| || |||| | || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| |||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||||||||| |||||||||||||| |||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcacta 45
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| ||||| ||||||||||||||||||||| ||||||| |||| |||| |||
Sbjct: 89 tactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgct 30
Query: 75 cttatattaatttacagaggaagta 99
|||||||| |||||||||| ||||
Sbjct: 29 tttatattagtttacagagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||| ||||||||||| |||| |||| || |||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 75 cttatattaattta 88
||||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 81.8 bits (41), Expect = 2e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||||| ||||||| |||||| || |||| ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 75 cttatatta 83
|||||||||
Sbjct: 65 cttatatta 73
Score = 58.0 bits (29), Expect = 3e-08
Identities = 73/85 (85%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||| ||| ||| ||||||||||| ||||||| |||| || |||| ||||||||
Sbjct: 88 tactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaacgct 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| |||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 81.8 bits (41), Expect = 2e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| |||||| ||||||||||||||||||| | ||||||| |||| ||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 75 cttatatta 83
|||||||||
Sbjct: 74 cttatatta 66
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttag 49
|||||||||||||||| ||||||||||| |||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 67 taaacgctcttatattaatttacagaggaagta 99
||||||||||||||||| |||||||||| ||||
Sbjct: 37 taaacgctcttatattagtttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 33 aatataagagcatttagattactaaaataatgat-taaacgctcttatattaatttacag 91
||||||||||| ||||||| |||| ||||||| |||| |||||||||||| ||||| |
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 92 aggaagta 99
||| ||||
Sbjct: 127 agggagta 134
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
|||||||||||||||| ||||||||||| ||| ||| ||||||||| |||| |||||||
Sbjct: 4 ctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgc 63
Query: 74 tcttatattaatttacagagg 94
|||||||||| ||||| ||||
Sbjct: 64 tcttatattagtttacggagg 84
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 21 cctctgtaaacaaatataagagcatttagattactaaaataatgatt-aaacgctcttat 79
|||| |||||| ||||||||||| ||||||| |||| || |||| ||||||||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 80 attaatttacagaggaagtag 100
||||||||||||||| |||||
Sbjct: 24 attaatttacagagggagtag 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 17 actccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctc 75
|||||||| |||||| ||||||||||| ||||||| ||||||||| |||| |||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 76 ttatattaatttacagaggaagta 99
|||||||||||||| |||| ||||
Sbjct: 28 ttatattaatttacggagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||||||||||||||||||| || ||||||| |||||||| |||| ||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 75 cttatatt 82
||||||||
Sbjct: 65 cttatatt 72
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 19 tccctctgtaaacaaatataagagcatttagattacta 56
|||||| ||||| |||||||||||| ||||||| ||||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcacta 49
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
|||||||||| |||||| |||||||||||||||| || | ||||||| |||| ||||| |
Sbjct: 90 ctactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacac 31
Query: 74 tcttatattaatttacagaggaagtag 100
|||||||||| ||||| |||| |||||
Sbjct: 30 tcttatattagtttacggagggagtag 4
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgatt-aaacgc 73
|||||||||| |||||| |||||||||| ||||||| |||| |||||||| ||| ||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 74 tcttatattaatttacagaggaagtag 100
|||||||||| ||||| |||| |||||
Sbjct: 64 tcttatattagtttaccgagggagtag 90
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 77.8 bits (39), Expect = 3e-14
Identities = 81/96 (84%), Gaps = 8/96 (8%)
Strand = Plus / Plus
Query: 12 aagctactccctctgtaaacaaatataagagcatttagattactaaaataatg------- 64
||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct: 1 aagctaccccctctgtaaactaatataagagcatttagatcactaaaatagtgagatcta 60
Query: 65 -attaaacgctcttatattaatttacagaggaagta 99
|| |||||||||||||||| |||||||||| ||||
Sbjct: 61 aatgaaacgctcttatattagtttacagagggagta 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagc 43
|||||||||||||||| |||||||||||
Sbjct: 96 tactccctctgtaaactaatataagagc 69
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 75 cttatattaatttacagaggaagtag 100
||||||||| ||||| |||| |||||
Sbjct: 65 cttatattagtttacggagggagtag 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttaga 50
|||||||||| |||||| ||||||||||| ||||||
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttaga 55
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
||||||||||||||||| ||||||||||| |||||||||||||| || || | |||| ||
Sbjct: 4 ctactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgc 63
Query: 74 tcttatattaatttacag 91
| |||||||| |||||||
Sbjct: 64 ttttatattagtttacag 81
Score = 60.0 bits (30), Expect = 6e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||| |||||||| ||||||| |||||||||| |||| || | || ||||||||
Sbjct: 89 tactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgct 30
Query: 75 cttatattaatttacagaggaagtag 100
||||||||| |||||||||| |||||
Sbjct: 29 cttatattagtttacagagggagtag 4
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
||||||| ||||||||| | ||||||||| ||||||| |||||| || | || |||||||
Sbjct: 90 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 31
Query: 74 tcttatattaatttacagaggaagta 99
|||||||||||||||| |||| ||||
Sbjct: 30 tcttatattaatttacggagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| ||||| ||||||||||| |||||||||||| || |||| ||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 75 cttatattaatttacaga 92
|||||| || ||||||||
Sbjct: 65 cttatagtagtttacaga 82
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||| || |||| ||||||||| || |||| ||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| |||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||||||||| |||||||||| ||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatg 64
|||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttaaattactaaaataatg 53
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
||||| |||||||||| |||||||||||| ||||||| ||| || || |||| |||||||
Sbjct: 4 ctactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgc 63
Query: 74 tcttatattaatttacagagg 94
||||||||| ||||||||||
Sbjct: 64 tcttatatttctttacagagg 84
Score = 60.0 bits (30), Expect = 6e-09
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 20 ccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctctta 78
||||||||||| |||||||||||| ||||||| |||| | |||| ||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 79 tattaatttacagaggaagtag 100
|||| |||||||||| |||||
Sbjct: 25 tatttctttacagaggtagtag 4
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 19 tccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctctt 77
|||||| |||||| ||||||||||| |||||| ||||||| ||||||| |||| ||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 78 atattaatttacagaggaagta 99
|||||| |||||| ||| ||||
Sbjct: 68 atattagtttacaaagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagat 51
|||||||| ||||||| ||||||| |||||||||||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagat 54
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 19 tccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctctt 77
||||||||||||| ||||||||| | ||||||| |||||| || |||| |||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 78 atattaatttacagaggaagta 99
|||||| |||||||||| ||||
Sbjct: 68 atattagtttacagagggagta 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||| | ||||||| |||| || |||| |||| | |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 75 cttatattaatttacagagg 94
||||||||| ||||||||||
Sbjct: 29 cttatattagtttacagagg 10
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 67.9 bits (34), Expect = 3e-11
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||||||||||||||| ||| | ||||||| ||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacgct 30
Query: 75 cttatattaattta 88
|||||||| ||||
Sbjct: 29 tttatattagttta 16
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||||||||||||| ||||||| | ||||||||| |||||| || | || ||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 75 cttatattaatttacagaggaagta 99
||||||||| ||||| |||| ||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattacta 45
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgattaaacgctc 75
|||||||||||||||| |||||||||| ||||||| ||||||||| | ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataactaaaatagt-tctaaacgcta 63
Query: 76 ttatattaatttacagaggaagta 99
|||||||| ||||| |||| ||||
Sbjct: 64 ttatattagtttacggagggagta 87
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgattaaacgctc 75
|||||||||||||||| ||||||| || ||||||| ||||||||| | |||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagt-tctaaacgctc 63
Query: 76 ttatattaatttacagaggaagta 99
|||||||| ||||| |||| ||||
Sbjct: 64 ttatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttaga 50
||||||||| |||||| ||||||||||| ||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaa 58
|||||||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcactaaa 47
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaata 61
||||||||||||||| |||||||||| | ||||||| |||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaata 50
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| |||||| ||||||||| ||||||||||||| || || || | |||| |||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 75 cttatattaattta 88
||||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttaga 50
||||||||| ||||| ||||||||||||||||||
Sbjct: 89 tactccctccataaactaatataagagcatttaga 55
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||| |||||| ||||||||||||||||||| ||||
Sbjct: 88 ctactccctccgtaaactaatataagagcatttagatcacta 47
Score = 58.0 bits (29), Expect = 3e-08
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 21 cctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctcttat 79
||||||||||| ||||||| ||||||||||| ||| || || |||| |||| ||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcact-aagtagtgatctaaatgctcttat 67
Query: 80 attaatttacagaggaagtag 100
|||| ||||| |||| |||||
Sbjct: 68 attagtttacggagggagtag 88
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 7/85 (8%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||||||||| |||||||||||| ||||||| ||| ||||| ||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcact------atgatctaaacgct 30
Query: 75 cttatattaatttacagaggaagta 99
|||||||| |||||||||| ||||
Sbjct: 29 cttatatttctttacagagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagat 51
||||||||||||||| |||||||||||| |||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagat 40
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataacta 49
Score = 50.1 bits (25), Expect = 6e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
||||||||| ||||| |||||||||||| |||||| |||||| || | || |||| |||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgct 64
Query: 75 cttatattaatttacagaggaagta 99
|||||||| |||| ||||| ||||
Sbjct: 65 cttatatttctttatagagggagta 89
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataacta 49
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 22 ctctgtaaacaaatataagagcatttagattacta 56
|||||||||||||||||||||| ||||||| ||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcacta 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 32 aaatataagagcatttagattactaaaataatgat-taaacgctcttatattaatttaca 90
||||||||||| | ||||| |||||| || |||| |||||||||||||||| ||||||
Sbjct: 73 aaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtttaca 14
Query: 91 gaggaagt 98
||| ||||
Sbjct: 13 gagcaagt 6
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaacaaatataagagcatttagattacta 56
||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataaga 41
||||||||||||||| ||||||||||
Sbjct: 5 tactccctctgtaaagaaatataaga 30
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgct 74
|||||| |||||||| |||||||||||| | ||||| |||||| || | || ||||| ||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacact 64
Query: 75 cttatattaatttacagaggaagtag 100
|||||||| ||||| |||| |||||
Sbjct: 65 cttatatttctttacggagggagtag 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgc 73
|||||||||| ||||| ||||||||||| ||||||| |||| || |||| || ||||
Sbjct: 90 ctactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgc 31
Query: 74 tcttatattaatttacaga 92
||||||||| ||||||||
Sbjct: 30 tcttatatttctttacaga 12
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||||||||| ||||||||| | ||||||| ||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcacta 49
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 19 tccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctctt 77
||||| ||||||| ||||||||||| || |||| | |||||| |||| ||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 78 atattaatttacagagg 94
|||||| ||||| ||||
Sbjct: 68 atattagtttacggagg 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 17 actccctctgtaaacaaatataagagcatttagattactaaaataatgat-taaacgctc 75
|||||||| |||||| |||||||||| ||||||| || | ||||||| | |||||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 76 ttatattaatttaca 90
|||||||| ||||||
Sbjct: 28 ttatattagtttaca 14
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 19 tccctctgtaaacaaatataagagcatttagattactaa--aataatgat-taaacgctc 75
||||||||||||| ||||||||| | ||||||| ||||| | || |||| |||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 76 ttatattaatttacagaggaagta 99
|||||||| |||||||||| ||||
Sbjct: 68 ttatattagtttacagagggagta 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
|||||||||||||||| ||||||||| | ||||||| ||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagca 44
|||||||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagca 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 14 gctactccctctgtaaacaaatataagagc 43
||||||||||| |||||| |||||||||||
Sbjct: 64 gctactccctccgtaaactaatataagagc 35
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaacaaatataagagcatttagattacta 56
||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 26 gtaaacaaatataagagcatttagattactaaaataatga-ttaaacgctcttatattaa 84
|||||||||||||||||| || |||| ||| || || ||| ||||||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 85 tttacagaggaagta 99
||||| |||| ||||
Sbjct: 19 tttacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagagcatttag 49
||||||||| ||||| |||||||||||| |||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttag 38
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaacaaatataagag 42
|||||||||||||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
