miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgtttttgcaagctaaaacaacttgcaaaaacat 66
||||||||| || ||||||||||||||||||| ||| |||| | | ||||||||||| |
Sbjct: 89 tactccctctatcccataatgtaagacgtttttacaaactaacatagcttgcaaaaacgt 30
Query: 67 cttacactgtgggacggaggaagta 91
||||| | ||||||||| ||||||
Sbjct: 29 attacattatgggacggaagaagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 14 tccgtctcataatgtaagacgtttttgcaagcta 47
|||||| |||||||||| ||||||||||||||||
Sbjct: 12 tccgtcccataatgtaatacgtttttgcaagcta 45
>RF00906;MIR1122;AY196347.1/5474-5564 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 37 tttgcaagctaaaacaacttgcaaaaacatcttacactgtgggacggaggaagta 91
|||||||| |||| ||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 33 tttgcaagttaaacaaacttgcaaaaacatcttatattgtgggacggagggagta 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgtttttgcaag 44
||||||||||||| || ||| ||||| |||||||||||
Sbjct: 87 tactccctccgtcccacaatataagatgtttttgcaag 50
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ttactccctccgtctcataatgtaagacgttttt 39
|||||||||| |||||||||||||||||||||||
Sbjct: 4 ttactccctctgtctcataatgtaagacgttttt 37
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| ||||||||||||| |||||
Sbjct: 90 tactccctccgtcccataatgtaagacattttt 58
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| |||||||||||||||||||
Sbjct: 89 tactccctccgtcccataatgtaagacgttttt 57
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctccgtcccataatgtaagacgttttt 37
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| ||||||||| |||||||||
Sbjct: 107 tactccctccgtcccataatgtaggacgttttt 75
>RF00906;MIR1122;EU200767.1/2385-2293 37682:Aegilops tauschii
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgtttttgcaagctaaaacaacttgcaaaaacat 66
|||||||||| || |||||| |||||| |||||||||||||| | | ||||||||| |
Sbjct: 5 tactccctccctcccataatataagacctttttgcaagctaacatagcttgcaaaatggt 64
Query: 67 cttacactgtgggacggaggaagta 91
|||| | | ||||||||||| ||||
Sbjct: 65 cttatattatgggacggagggagta 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgtttttgcaagcta 47
||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 89 tactccctccgtcccataatataagaccattttgcaagcta 49
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaagacgttttt 39
||||| |||||||| |||||||||||||||||||
Sbjct: 92 ttacttcctccgtcccataatgtaagacgttttt 59
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| |||||||||||| ||||||
Sbjct: 5 tactccctccgtcccataatgtaagaggttttt 37
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
||||||||||||| |||||||||||||| ||||
Sbjct: 5 tactccctccgtcccataatgtaagacgctttt 37
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgttttt 39
|||| |||||||| |||||||||||||||||||
Sbjct: 5 tacttcctccgtcccataatgtaagacgttttt 37
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgtttt 38
||||||||||||| ||||||||||||||||||
Sbjct: 79 tactccctccgtc-cataatgtaagacgtttt 49
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 cctccgtctcataatgtaagacgttttt 39
|||||||| |||||||||||||||||||
Sbjct: 91 cctccgtcccataatgtaagacgttttt 64
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 cctccgtctcataatgtaagacgttttt 39
|||||||| |||||||||||||||||||
Sbjct: 62 cctccgtcccataatgtaagacgttttt 35
>RF00906;MIR1122;AP005261.4/109260-109376 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgtttt 38
|||||||||||| |||||||||||||| ||||
Sbjct: 5 tactccctccgtttcataatgtaagacttttt 36
>RF00906;MIR1122;AAAA02005618.1/85725-85886 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaagac 33
||||||||||||| ||||||||||||||
Sbjct: 159 ttactccctccgtttcataatgtaagac 132
>RF00906;MIR1122;AAAA02004418.1/2515-2382 39946:Oryza sativa
Indica Group
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tattactccctccgtctcataatgtaag 31
||||||||||||||||||||||| ||||
Sbjct: 2 tattactccctccgtctcataatataag 29
>RF00906;MIR1122;AC093953.2/28747-28908 39947:Oryza sativa Japonica
Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaagac 33
||||||||||||| ||||||||||||||
Sbjct: 159 ttactccctccgtttcataatgtaagac 132
>RF00906;MIR1122;AAAA02015039.1/73812-73973 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgtttt 38
|||||||||||| |||||||||||||| ||||
Sbjct: 5 tactccctccgtttcataatgtaagacttttt 36
>RF00906;MIR1122;AACV01010647.1/16392-16231 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagacgtttt 38
|||||||||||| |||||||||||||| ||||
Sbjct: 158 tactccctccgtttcataatgtaagacttttt 127
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cctccgtctcataatgtaagacgtttt 38
|||||||| ||||||||||||||||||
Sbjct: 91 cctccgtcccataatgtaagacgtttt 65
>RF00906;MIR1122;AACV01006898.1/39166-39311 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtttcataatgtaagac 31
>RF00906;MIR1122;AAAA02006450.1/4529-4668 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgta 29
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcataatgta 27
>RF00906;MIR1122;AAAA02014181.1/4882-4767 39946:Oryza sativa Indica
Group
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 112 tactccctccgtttcataatgtaagac 86
>RF00906;MIR1122;ABRL01000382.1/8325-8450 65489:Oryza barthii
Length = 126
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 122 tactccctccgtttcataatgtaagac 96
>RF00906;MIR1122;AAAA02008053.1/17150-17309 39946:Oryza sativa
Indica Group
Length = 160
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 156 tactccctccgtttcataatgtaagac 130
>RF00906;MIR1122;AAAA02023717.1/13397-13545 39946:Oryza sativa
Indica Group
Length = 149
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgta 29
|||||||||||||||||||||||
Sbjct: 145 tactccctccgtctcataatgta 123
>RF00906;MIR1122;AC120529.3/33430-33575 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtttcataatgtaagac 31
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 142 tactccctccgtttcataatgtaagac 116
>RF00906;MIR1122;AAAA02006407.1/37604-37445 39946:Oryza sativa
Indica Group
Length = 160
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtttcataatgtaagac 31
>RF00906;MIR1122;AAAA02005800.1/23183-23322 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaaga 32
||||||||||||||||||||| |||||
Sbjct: 137 ttactccctccgtctcataatataaga 111
>RF00906;MIR1122;AP003932.3/46760-46610 39947:Oryza sativa Japonica
Group
Length = 151
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 147 tactccctccgtttcataatgtaagac 121
>RF00906;MIR1122;AC140005.2/42932-42813 39947:Oryza sativa
Japonica Group
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tattactccctccgtctcataat 26
|||||||||||||||||||||||
Sbjct: 2 tattactccctccgtctcataat 24
>RF00906;MIR1122;AL663005.3/79671-79830 39947:Oryza sativa
Japonica Group
Length = 160
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtttcataatgtaagac 31
>RF00906;MIR1122;AAAA02029549.1/21613-21774 39946:Oryza sativa
Indica Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtttcataatgtaagac 31
>RF00906;MIR1122;AC137589.2/147211-147089 39947:Oryza sativa
Japonica Group
Length = 123
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tattactccctccgtctcataat 26
|||||||||||||||||||||||
Sbjct: 2 tattactccctccgtctcataat 24
>RF00906;MIR1122;AACV01015348.1/13831-13958 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 124 tactccctccgtttcataatgtaagac 98
>RF00906;MIR1122;AAAA02022635.1/21983-21840 39946:Oryza sativa
Indica Group
Length = 144
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 140 tactccctccgtttcataatgtaagac 114
>RF00906;MIR1122;AP005729.3/123154-122993 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaagac 33
|||||||||||| ||||||||||||||
Sbjct: 158 tactccctccgtttcataatgtaagac 132
>RF00906;MIR1122;EF115142.1/468-377 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaagacgttttt 39
||||||||||||| |||||| ||||||||||||
Sbjct: 89 ttactccctccgtaacataatataagacgttttt 56
>RF00906;MIR1122;AJ507395.1/8084-8185 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 tactccctccgtctcataatgtaagacgtt 36
||||||||||||| |||||| |||||||||
Sbjct: 5 tactccctccgtcccataatataagacgtt 34
>RF00906;MIR1122;AAAA02014011.1/23143-23002 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 139 ttactccctccgtttcataatgtaag 114
>RF00906;MIR1122;AAAA02004745.1/86622-86461 39946:Oryza sativa
Indica Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 4 ttactccctccgtttcataatgtaag 29
>RF00906;MIR1122;AAAA02003204.1/17037-17198 39946:Oryza sativa
Indica Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 159 ttactccctccgtttcataatgtaag 134
>RF00906;MIR1122;AC210492.2/95445-95606 4538:Oryza glaberrima
(African rice)
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 4 tattactccctccgtctcataatgtaagac 33
||||||||||||||| ||| ||||||||||
Sbjct: 161 tattactccctccgtttcacaatgtaagac 132
>RF00906;MIR1122;AP002866.1/46564-46725 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 159 ttactccctccgtttcataatgtaag 134
>RF00906;MIR1122;AP005383.3/77876-77739 39947:Oryza sativa Japonica
Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtctcataatgtaaga 32
|||||||||||||||||||| |||||
Sbjct: 134 tactccctccgtctcataatataaga 109
>RF00906;MIR1122;AAAA02025818.1/4289-4148 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 4 ttactccctccgtttcataatgtaag 29
>RF00906;MIR1122;AP004801.3/81541-81678 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ttactccctccgtctcataatgtaag 31
||||||||||||| ||||||||||||
Sbjct: 4 ttactccctccgtttcataatgtaag 29
