miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 57 ataatgtaagatattttttgacagtagtgtagtataaaaaga---attacattatgggac 113
||||||||||| | ||||||||| ||||||||||| |||| | ||||||||||||||
Sbjct: 74 ataatgtaagacactttttgacactagtgtagtatcaaaaaacctcttacattatgggac 15
Query: 114 agagggagta 123
|||||||||
Sbjct: 14 ggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctacgtcccataatgtaaga 36
|||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtcccataatgtaaga 30
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 tactccctacgtcccataatgtaagaca 38
|||||||| |||||||||||||||||||
Sbjct: 90 tactccctccgtcccataatgtaagaca 63
>RF00906;MIR1122;AP008209.1/26976879-26977035 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 attatgggacagagggagtatcta 127
||||||||||||||||||||||||
Sbjct: 134 attatgggacagagggagtatcta 157
>RF00906;MIR1122;AAAA02000637.1/653-774 39946:Oryza sativa Indica
Group
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 tacattatgggacagagggagtat 124
||||||||||||||||||||||||
Sbjct: 96 tacattatgggacagagggagtat 119
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tactccctacgtcccataatgtaagac 37
|||||||| ||||||||||||||||||
Sbjct: 89 tactccctccgtcccataatgtaagac 63
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctacgtcccataatgtaagac 37
|||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccataatgtaagac 31
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctacgtcccataatgtaagac 37
|||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccataatgtaagac 31
>RF00906;MIR1122;AAAA02030634.1/11870-11745 39946:Oryza sativa
Indica Group
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 102 acattatgggacagagggagtat 124
|||||||||||||||||||||||
Sbjct: 26 acattatgggacagagggagtat 4
>RF00906;MIR1122;AACV01022269.1/33793-33668 39947:Oryza sativa
Japonica Group
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 102 acattatgggacagagggagtat 124
|||||||||||||||||||||||
Sbjct: 26 acattatgggacagagggagtat 4
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ttactccctacgtcccataatgtaag 35
||||||||||||||||||||| ||||
Sbjct: 236 ttactccctacgtcccataatataag 211
>RF00906;MIR1122;AC105928.2/150423-150279 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 102 acattatgggacagagggagta 123
||||||||||||||||||||||
Sbjct: 26 acattatgggacagagggagta 5
>RF00906;MIR1122;AAAA02008004.1/32040-31914 39946:Oryza sativa
Indica Group
Length = 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 102 acattatgggacagagggagta 123
||||||||||||||||||||||
Sbjct: 26 acattatgggacagagggagta 5
