miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 71.9 bits (36), Expect = 1e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 44 cttagtactaaatttacgacacttattttgggacggagtgagta 87
||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 48 cttagtactaaatttgcgacacttattttgggacggagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 cgacacttattttgggacggagtgagtat 88
|||||||||||||||||||||| ||||||
Sbjct: 75 cgacacttattttgggacggagggagtat 103
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 52 taaatttacgacacttattttgggacggagtgagta 87
|||||||||||||||||||||||||| ||| |||||
Sbjct: 67 taaatttacgacacttattttgggaccgagggagta 102
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagtattta 91
||||||||||||||||||||| |||||||||
Sbjct: 74 gacacttattttgggacggagggagtattta 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagtat 88
||||||||||||||||||||| ||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagtattt 90
||||||||||||||||||||| ||||||||
Sbjct: 31 gacacttattttgggacggagggagtattt 2
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagtattt 90
|||| |||||||||||||||||||||||||
Sbjct: 31 gacagttattttgggacggagtgagtattt 2
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagtat 88
||||||||||||||||||||| ||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 59 acgacacttattttgggacggagtgagtattt 90
|||||||||||||| |||||||| ||||||||
Sbjct: 74 acgacacttattttaggacggagggagtattt 105
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagtat 88
||||||||||||||||||||| ||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagta 87
||||||||||||||||||||| |||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagtat 88
||||||||||||||||||||| ||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagtat 88
||||||||||||||||||||| ||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagta 87
||||||||||||||||||||| |||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 gacacttattttgggacggagtgagta 87
||||||||||||||||||||| |||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagta 87
||||||||||||||||||||| |||||
Sbjct: 75 gacacttattttgggacggagggagta 101
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 attttgggacggagtgagtattt 90
|||||||||||||||||||||||
Sbjct: 122 attttgggacggagtgagtattt 144
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 220 cacttattttgggacggagggagtat 245
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 62 acacttattttgggacggagtgagta 87
|||||||||||||||||||| |||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 216 cacttattttgggacggagggagtat 241
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 cgacacttattttgggacggag 81
||||||||||||||||||||||
Sbjct: 79 cgacacttattttgggacggag 100
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 48 gtactaaatttacgacacttattttgggacggag 81
||||||||| | |||||||||||||||||||||
Sbjct: 44 gtactaaatcaatgacacttattttgggacggag 11
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 88 cacttattttgggacggagggagtat 113
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 76 cacttattttgggacggagggagtat 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagtattt 90
|||| |||||||||||||||| ||||||||
Sbjct: 75 gacagttattttgggacggagggagtattt 104
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 48 gtactaaatttacgacacttattttgggacggag 81
||||||| ||| |||||||||||||||||||||
Sbjct: 44 gtactaagcttaagacacttattttgggacggag 11
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 gacacttattttgggacggagtgagtattt 90
|||| |||||||||||||||| ||||||||
Sbjct: 75 gacagttattttgggacggagggagtattt 104
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 cacttattttgggacggagtgagtat 88
||||||||||||||||||| ||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;AP008212.1/29073772-29073890 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tatatgctccctccgtcctaaa 31
||||||||||||||||||||||
Sbjct: 1 tatatgctccctccgtcctaaa 22
