miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 67.9 bits (34), Expect = 4e-11
Identities = 79/92 (85%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctgaatttggctgtggagtcatacacaaag 87
||||||| ||||||||||||||||||||||||||| ||| |||| | | | || |
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaa---aaaagcagat 56
Query: 88 caagaatcggtcgataaacctctgcatccagc 119
||||||||||||||||||||||||||||||||
Sbjct: 57 caagaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctg 60
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctg 60
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tcgataaacctctgcatccagc 119
||||||||||||||||||||||
Sbjct: 70 tcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctg 60
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccagc 119
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 84 aaagcaagaatcggtcgataaacctctgcatccagc 119
||||||||||||| ||||||||||||||||||||||
Sbjct: 56 aaagcaagaatcgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ctggaggcagcggttcatcgatc 52
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 30 ctggaggcagcggttcatcgatctcttcctg 60
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 84 aaagcaagaatcggtcgataaacctctgcatccagc 119
|||||| |||| | ||||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctgaa 62
|||||||||||||||||||||||||| ||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctgaattt 65
||||||| |||||||||||||||||| |||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaattt 38
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccagc 119
|||||||||||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccagc 119
|||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccagc 119
|||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccag 118
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 91 gaatcggtcgataaacctctgcatccag 118
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 ctggaggcagcggttcatcgatctctt 56
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
