miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 87.7 bits (44), Expect = 3e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 26 taaaataagtgtagcaaatttagtattaagttagtataaattttatattaaaacatcaac 85
|||||||||||| ||||||||||||||||||||||||||||| || ||||||| | ||
Sbjct: 19 taaaataagtgtcacaaatttagtattaagttagtataaatttagtactaaaacagcgac 78
Query: 86 acttattttggaacggagggagta 109
||||||||||| ||| ||| ||||
Sbjct: 79 acttattttgggacgaaggaagta 102
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 27 aaaataagtgtagcaaatttagtattaagttagtataaattttatattaaaacatcaaca 86
||||||||||| |||||||||||| |||||||||| |||| | ||| || | || | |||
Sbjct: 20 aaaataagtgtcgcaaatttagtactaagttagtacaaatataatactagagcagcgaca 79
Query: 87 cttattttggaacggagggagta 109
|||||||||| ||||||||||||
Sbjct: 80 cttattttgggacggagggagta 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagtag 110
||||||||||||| |||||||||||||
Sbjct: 30 acacttattttgggacggagggagtag 4
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 63.9 bits (32), Expect = 4e-10
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 18 ctctgccctaaaataagtgtagcaaatttagtattaagttagtataaattttatattaaa 77
||||| || ||||||||||| |||||||| | ||| |||||| |||||||||| ||||
Sbjct: 96 ctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaattttatactaaa 37
Query: 78 acatcaacacttattttggaacggagggagta 109
|| | |||||||||||| ||||||||||||
Sbjct: 36 tcagcgacacttattttgatacggagggagta 5
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagtag 110
|||||||||||||||||||||||||||
Sbjct: 30 acacttattttggaacggagggagtag 4
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 cacttattttggaacggagggagtaga 111
|||||||||||||||||||||||||||
Sbjct: 61 cacttattttggaacggagggagtaga 87
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||||||||||||||||
Sbjct: 105 acacttattttggaacggagggagta 130
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||||||||||||||||
Sbjct: 30 acacttattttggaacggagggagta 5
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||||||||||||||||
Sbjct: 30 acacttattttggaacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 ttattttggaacggagggagta 109
||||||||||||||||||||||
Sbjct: 80 ttattttggaacggagggagta 101
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 89 tattttggaacggagggagtagatt 113
|||||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtagatt 1
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 43 atttagtattaagttagtataaattttatattaaaacatcaacacttattttggaacgga 102
|||||||| ||||||||||||| || ||||||| || | ||||||||||||| ||||
Sbjct: 36 atttagtacaaagttagtataaagttg-tattaaatcagcgacacttattttgggacggc 94
Query: 103 gggagtag 110
||||||||
Sbjct: 95 gggagtag 102
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa Japonica
Group
Length = 247
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagtag 110
||||||||||||| |||||||||||||
Sbjct: 27 acacttattttgggacggagggagtag 1
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagtag 110
||||||||||||| |||||||||||||
Sbjct: 30 acacttattttgggacggagggagtag 4
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagtag 110
||||||||||||| |||||||||||||
Sbjct: 30 acacttattttgggacggagggagtag 4
>RF00906;MIR1122;AP008216.1/15579713-15579809 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 acttattttggaacggagggagtagat 112
||||||||||| |||||||||||||||
Sbjct: 28 acttattttgggacggagggagtagat 2
>RF00906;MIR1122;AAAA02028021.1/47476-47381 39946:Oryza sativa
Indica Group
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 91 ttttggaacggagggagtagatt 113
|||||||||||||||||||||||
Sbjct: 23 ttttggaacggagggagtagatt 1
>RF01058;MIR806;AACV01000175.1/175-418 39947:Oryza sativa Japonica
Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||| |||||||||||||
Sbjct: 26 cacttattttgggacggagggagtag 1
>RF01058;MIR806;AAAA02015465.1/824-1069 39946:Oryza sativa Indica
Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||| |||||||||||||
Sbjct: 221 cacttattttgggacggagggagtag 246
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||| |||||||||||||
Sbjct: 216 cacttattttgggacggagggagtag 241
>RF01058;MIR806;AAAA02012959.1/2038-1794 39946:Oryza sativa Indica
Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||| |||||||||||||
Sbjct: 26 cacttattttgggacggagggagtag 1
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||||||||||| |||||
Sbjct: 220 cacttattttggaacggaggtagtag 245
>RF01058;MIR806;AAAA02007955.1/54103-53859 39946:Oryza sativa Indica
Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 cacttattttggaacggagggagtag 110
|||||||||||| |||||||||||||
Sbjct: 26 cacttattttgggacggagggagtag 1
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtag 4
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 75 acacttattttgggacggagggagta 100
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||||||||| ||||||
Sbjct: 30 acacttattttggaacggaaggagta 5
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 70 tattttggaacggagggagtag 91
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
|||||||||||||| |||||||||||
Sbjct: 65 acacttattttggatcggagggagta 90
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 acacttattttggaacggagggagta 109
||||||||||||| ||||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02030656.1/4636-4541 39946:Oryza sativa Indica
Group
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 72 tattttggaacggagggagtag 93
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 133 tattttggaacggagggagtag 154
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 109 tattttggaacggagggagtag 130
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtag 4
>RF00906;MIR1122;AAAA02015448.1/20736-20847 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 88 tattttggaacggagggagtag 109
>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtag 110
||||||||||||||||||||||
Sbjct: 98 tattttggaacggagggagtag 119
