miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02034091.1/42794-42914 39946:Oryza sativa
Indica Group
Length = 121
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 8 attactccctccattccaaaatataag 34
|||||||||||||||||||||||||||
Sbjct: 119 attactccctccattccaaaatataag 93
>RF00906;MIR1122;AP003866.3/59767-59922 39947:Oryza sativa
Japonica Group
Length = 156
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tattactccctccattccaaaatata 32
||||||||||||||||||||||||||
Sbjct: 2 tattactccctccattccaaaatata 27
>RF00906;MIR1122;AACV01003595.1/38638-38749 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 attactccctccattccaaaatata 32
|||||||||||||||||||||||||
Sbjct: 3 attactccctccattccaaaatata 27
>RF00906;MIR1122;ABXC01001279.1/17843-17947 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 7 tattactccctccattccaaaatataag 34
||||||||||||||||||||| ||||||
Sbjct: 104 tattactccctccattccaaattataag 77
>RF01058;MIR806;AP005912.3/106817-106576 39947:Oryza sativa Japonica
Group
Length = 242
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 ttactccctccattccaaaatataagg 35
||||||||||||||||| |||||||||
Sbjct: 242 ttactccctccattccataatataagg 216
>RF00906;MIR1122;AP003948.2/13023-12867 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 ttactccctccattccaaaatataagg 35
||||||||||||| |||||||||||||
Sbjct: 4 ttactccctccatcccaaaatataagg 30
>RF00906;MIR1122;AAAA02012208.1/21065-20931 39946:Oryza sativa
Indica Group
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 attactccctccattccaaaatataag 34
|||||||||||||| ||||||||||||
Sbjct: 3 attactccctccatcccaaaatataag 29
>RF00906;MIR1122;AL731589.3/62942-62786 39947:Oryza sativa Japonica
Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 attactccctccattccaaaatataag 34
|||||||||||||| ||||||||||||
Sbjct: 155 attactccctccatcccaaaatataag 129
