miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 13 tactccctccatcttaaaataaatgccgttgatctagtacaaaatttatactaatttagt 72
|||||||||| || |||||||| || ||||||||||||||||||||| |||| |||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtcgttgatctagtacaaaatttgtactcatttagt 43
Query: 73 attgaatttgtgacacttatttt 95
| ||||| || | ||||||||||
Sbjct: 42 actgaatatgcgtcacttatttt 20
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 13 tactccctccatcttaaaataaatgccgttgatctagtacaaaatttatactaatttagt 72
|||||||||| | | ||||||| || || |||| ||||| ||||||| ||||||||||||
Sbjct: 5 tactccctccgtatcaaaataagtgtcgctgatttagtataaaatttgtactaatttagt 64
Query: 73 attgaatttgtgacacttattttggaacggagggagtat 111
| ||||||||||||||||||||| || ||||||||||
Sbjct: 65 tataaatttgtgacacttattttgggacagagggagtat 103
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 67.9 bits (34), Expect = 3e-11
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 13 tactccctccatcttaaaataaatgccgttgatctagtacaaaatttatactaatttagt 72
|||||||||| || ||||||| || || || ||||||| | |||| |||||| |||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgctgctctagtattatatttgtactaacttagt 43
Query: 73 attgaatttgtgacacttattttggaacggagggagta 110
| | |||||| |||||||||||||| ||||||||||||
Sbjct: 42 actaaatttgcgacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 76 gacacttattttgggacggagggagtat 103
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 47 tagtacaaaatttatactaatttagtattgaatttgtgacacttattttggaacggaggg 106
|||||| ||||||||||||| ||| || | ||||||||||||||||||| ||||||||
Sbjct: 68 tagtactaaatttatactaacttaatactaaatttgtgacacttattttaagacggaggg 9
Query: 107 agtat 111
|||||
Sbjct: 8 agtat 4
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 77 aatttgtgacacttattttggaacggagggagtat 111
|||||| ||||||||||||||||||||||||||||
Sbjct: 38 aatttgagacacttattttggaacggagggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 ttattttggaacggagggagtat 111
|||||||||||||||||||||||
Sbjct: 80 ttattttggaacggagggagtat 102
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagtat 111
||||||||||||||||||||||||||||
Sbjct: 104 gacacttattttggaacggagggagtat 131
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
||||||||||||||||||||||||||||
Sbjct: 31 gacacttattttggaacggagggagtat 4
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagta 110
|||||||||||||||||||||||||||
Sbjct: 31 gacacttattttggaacggagggagta 5
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 90 tattttggaacggagggagtatcat 114
|||||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtatcat 1
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 cacttattttggaacggagggagta 110
|||||||||||||||||||||||||
Sbjct: 61 cacttattttggaacggagggagta 85
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 74 gacacttattttgggacggagggagtat 101
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||||||||| |||||||
Sbjct: 31 gacacttattttggaacggaaggagtat 4
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 tgacacttattttggaacggagggagta 110
|||||||||||||||| |||||||||||
Sbjct: 63 tgacacttattttggatcggagggagta 90
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagta 110
|||||||||||||| ||||||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtat 111
|||||||||||||| |||||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tactactccctccatcttaaaat 32
|||||||||||||||||||||||
Sbjct: 100 tactactccctccatcttaaaat 78
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagta 110
|||||||||||||| ||||||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagta 110
|||||||||||||| ||||||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacacttattttggaacggagggagta 110
|||||||||||||| ||||||||||||
Sbjct: 75 gacacttattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02034559.1/3133-3272 39946:Oryza sativa Indica
Group
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 90 tattttggaacggagggagtatc 112
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtatc 3
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 220 cacttattttgggacggagggagtat 245
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa Japonica
Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 acacttattttggaacggagggagta 110
||||||||||||| ||||||||||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 216 cacttattttgggacggagggagtat 241
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 98 tattttggaacggagggagtat 119
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 133 tattttggaacggagggagtat 154
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 131 tattttggaacggagggagtat 152
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 44 tattttggaacggagggagtat 65
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtat 4
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtat 4
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 88 cacttattttgggacggagggagtat 113
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 76 cacttattttgggacggagggagtat 101
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 143 tattttggaacggagggagtat 164
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 84 gacacttattttggaacggagggagtatca 113
|||||||||||||| ||||| |||||||||
Sbjct: 31 gacacttattttgggacggatggagtatca 2
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 cacttattttggaacggagggagtat 111
|||||||||||| |||||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;AACV01008813.1/4556-4689 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtat 4
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttggaacggagggagtat 111
||||||||||||||||||||||
Sbjct: 71 tattttggaacggagggagtat 92
