miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 305 bits (154), Expect = 1e-82
Identities = 160/162 (98%)
Strand = Plus / Plus
Query: 1 gtggcggcaccaagcatgaagcaacaactgcagtacttgtggggaaagcacaagtaggac 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 6 gtggcggcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagtaggac 65
Query: 61 accaacattacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 accaacattacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggcttt 125
Query: 121 cttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 167
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 97.6 bits (49), Expect = 5e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 106 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 105 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccc 161
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 106 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 158
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 110 cttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 158
|||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 7e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 117 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 161
||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 119 ttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 161
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 118 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
|||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 122
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 118 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
|||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 118 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 158
||||||||||| ||||||||||||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 132 tgcagttgctgcctcaagcttgctgcctccc 162
|||||||||||||||||||||||||||||||
Sbjct: 98 tgcagttgctgcctcaagcttgctgcctccc 128
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 120 tcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
|||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 123
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 118 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 162
||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccc 122
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 108 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 158
|||||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
