miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 79/92 (85%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcagcggttcatcgatctcttcctgaatttggctgtggagtcatacacaaag 88
           ||||||| ||||||||||||||||||||||||||| |||  |||| |   | |  || | 
Sbjct: 1   cactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaa---aaaagcagat 56

                                           
Query: 89  caagaatcggtcgataaacctctgcatccagc 120
           ||||||||||||||||||||||||||||||||
Sbjct: 57  caagaatcggtcgataaacctctgcatccagc 88




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
          trichocarpa
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  tcgataaacctctgcatccagc 120
           ||||||||||||||||||||||
Sbjct: 70  tcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 92  gaatcggtcgataaacctctgcatccagc 120
           |||||| ||||||||||||||||||||||
Sbjct: 68  gaatcgatcgataaacctctgcatccagc 96




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
           (thale cress)
          Length = 91

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagc 120
           ||||||||||||| ||||||||||||||||||||||
Sbjct: 56  aaagcaagaatcgatcgataaacctctgcatccagc 91



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 ctggaggcagcggttcatcgatc 53
          |||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatc 25




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 31 ctggaggcagcggttcatcgatctcttcctg 61
          |||||||||||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg 33



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 85  aaagcaagaatcggtcgataaacctctgcatccagc 120
           |||||| |||| | ||||||||||||||||||||||
Sbjct: 53  aaagcatgaatagatcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 29 cactggaggcagcggttcatcgatctcttcctgaa 63
          |||||||||||||||||||||||||| ||||||||
Sbjct: 1  cactggaggcagcggttcatcgatcttttcctgaa 35




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 29 cactggaggcagcggttcatcgatctcttcctgaattt 66
          ||||||| |||||||||||||||||| |||||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctgttcctgaattt 38



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 92  gaatcggtcgataaacctctgcatccagc 120
           |||||||||||||||||||||||||||||
Sbjct: 62  gaatcggtcgataaacctctgcatccagc 90




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 92  gaatcggtcgataaacctctgcatccagc 120
           |||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 92  gaatcggtcgataaacctctgcatccagc 120
           |||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           |||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 92  gaatcggtcgataaacctctgcatccag 119
           |||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
          subsp. pekinensis
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 31 ctggaggcagcggttcatcgatctctt 57
          ||||||||||||||| |||||||||||
Sbjct: 3  ctggaggcagcggttgatcgatctctt 29