miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 91.7 bits (46), Expect = 4e-18
Identities = 93/106 (87%), Gaps = 2/106 (1%)
Strand = Plus / Minus
Query: 118 ggactacatgcggatgtatatagacatattttagagtgtagattcatccattctgttctg 177
||||||||| |||||| |||||||| |||||||||||||||||||| |||| || || |
Sbjct: 120 ggactacatacggatgaatatagacgtattttagagtgtagattcactcattttgctccg 61
Query: 178 tatgtagtccct-ttggagtctct-aaaagacttatatttaggaac 221
|||||||||| | || || ||||| |||||||||||||||||||||
Sbjct: 60 tatgtagtccatattagaatctctaaaaagacttatatttaggaac 15
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 201 aaaagacttatatttaggaacggag 225
|||||||||||||||||||||||||
Sbjct: 136 aaaagacttatatttaggaacggag 160
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 77.8 bits (39), Expect = 6e-14
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 82 ttcctaaatataggtctttttacatattccaacaagggactacatgcggatgtatataga 141
|||||||||||| |||||| || | ||| || || ||||||||| ||||||||||||||
Sbjct: 153 ttcctaaatataagtctttgtagagatttcactaatggactacatacggatgtatataga 94
Query: 142 catattttagagtgtagattcatccattctgttctgtatgtag 184
|||| ||||||||||| ||||| |||| || || ||||||||
Sbjct: 93 catactttagagtgtacattcaatcattttgctccgtatgtag 51
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 135 aaagacttatatttaggaacggag 158
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 71.9 bits (36), Expect = 4e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 119 gactacatgcggatgtatatagacatattttagagtgtagattcatccattctgttctgt 178
|||||||| ||||||||||||||||||||||||| | |||||||| |||| || || ||
Sbjct: 49 gactacattcggatgtatatagacatattttagaatatagattcactcattttgctccgt 108
Query: 179 atgtagtc 186
||||||||
Sbjct: 109 atgtagtc 116
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 201 aaaagacttatatttaggaacggag 225
|||||||||||||||||||||||||
Sbjct: 31 aaaagacttatatttaggaacggag 7
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 69.9 bits (35), Expect = 2e-11
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 120 actacatgcggatgtatatagacatattttagagtgtagattcatccattctgttctgta 179
||||||| |||||||| |||||||||||||||||| |||||||| |||| || || |||
Sbjct: 49 actacatacggatgtacatagacatattttagagtatagattcactcattttgctccgta 108
Query: 180 tgtagtc 186
|||||||
Sbjct: 109 tgtagtc 115
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 61.9 bits (31), Expect = 4e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 120 actacatgcggatgtatatagacatattttagagtgtagattc 162
||||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 52 actacatacggatgtacatagacatattttagagtatagattc 94
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 actactccctccgttcctaaat 31
||||||||||||||||||||||
Sbjct: 2 actactccctccgttcctaaat 23
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 120 actacatgcggatgtatatagacatattttag 151
||||||| ||||||||||||||||||||||||
Sbjct: 118 actacatacggatgtatatagacatattttag 87
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 actactccctccgttcctaaat 31
||||||||||||||||||||||
Sbjct: 3 actactccctccgttcctaaat 24
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 82 ttcctaaatataggtctttttacatattccaacaagggactacatgcggatgtatataga 141
|||||||||||| ||||||||| | || || | |||||||||| ||||||||||||||
Sbjct: 154 ttcctaaatataagtctttttagaagtttcactaggggactacatacggatgtatataga 95
Query: 142 cata 145
||||
Sbjct: 94 cata 91
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 201 aaaagacttatatttaggaacggag 225
|||||||||||||||||||||||||
Sbjct: 135 aaaagacttatatttaggaacggag 159
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 200 taaaagacttatatttaggaacggag 225
||||||||||||||||||||||||||
Sbjct: 120 taaaagacttatatttaggaacggag 145
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 34 aaagacttatatttaggaacggag 11
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 201 aaaagacttatatttaggaacggag 225
|||||||||||||||||||||||||
Sbjct: 35 aaaagacttatatttaggaacggag 11
Score = 46.1 bits (23), Expect = 2e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 196 tctctaaaag-acttatatttaggaacggag 225
|||||||||| ||||||||||||||||||||
Sbjct: 79 tctctaaaaggacttatatttaggaacggag 109
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 31 aaagacttatatttaggaacggag 8
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 34 aaagacttatatttaggaacggag 11
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 203 aagacttatatttaggaacggag 225
|||||||||||||||||||||||
Sbjct: 137 aagacttatatttaggaacggag 159
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 actactccctccgttcctaaat 31
||||||||||||||||||||||
Sbjct: 3 actactccctccgttcctaaat 24
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 109 aaagacttatatttaggaacggag 132
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 202 aaagacttatatttaggaacggag 225
||||||||||||||||||||||||
Sbjct: 34 aaagacttatatttaggaacggag 11
Score = 46.1 bits (23), Expect = 2e-04
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 145 attttagagtgtagattcatccattctgttctgtatgtagtccctt-tggagtctctaaa 203
||||||||||||||||||| |||| || | ||||||||||| | || | |||||| |
Sbjct: 73 attttagagtgtagattcactcattttgcttcgtatgtagtccatagtgaaatctctaca 132
Query: 204 -agacttatatttaggaacggag 225
||||||||||||||||||||||
Sbjct: 133 gagacttatatttaggaacggag 155
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 actactccctccgttcctaaat 31
||||||||||||||||||||||
Sbjct: 165 actactccctccgttcctaaat 144
>RF00906;MIR1122;AP003258.3/44726-44846 39947:Oryza sativa Japonica
Group
Length = 121
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 207 cttatatttaggaacggagaaagtag 232
||||||||||||||||||| ||||||
Sbjct: 29 cttatatttaggaacggaggaagtag 4
