miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 194 bits (98), Expect = 3e-49
Identities = 120/126 (95%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 129 tccctccgtcccaaaattcttgtcttaagtttgtttagaaatagatgtatcaaaatacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 69 aaacgtgactagatacattcatatctagacaaatgtaagacaagaa-ttttgggacggag 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
|||||||||||||||||||||||||||
Sbjct: 8 tccctccgtcccaaaattcttgtctta 34
Score = 46.1 bits (23), Expect = 2e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 133 taagacaagaatttttgggacggagggagta 163
||||||||||||||| |||||||||||||||
Sbjct: 103 taagacaagaatttt-gggacggagggagta 132
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 163 bits (82), Expect = 1e-39
Identities = 116/126 (92%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||| |||||||||||||||||||||| ||||| | |||||||||||||||| |||||
Sbjct: 129 tcccttcgtcccaaaattcttgtcttaactttgtttagaaatagatgtatctaattacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct: 69 aaacttgactagatacattcatatctaaacaaatctaagacaataa-ttttgggacggag 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
|||||||||||||||||| ||||||||
Sbjct: 8 tccctccgtcccaaaattattgtctta 34
Score = 44.1 bits (22), Expect = 7e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| || |||| ||||| ||||||||||| |||||||||| |||||||||
Sbjct: 77 tagatacatctatttctaaacaaagttaagacaagaa-ttttgggacgaagggagtat 133
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 157 bits (79), Expect = 7e-38
Identities = 116/127 (91%), Gaps = 1/127 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||||| ||||||||||||||| |||||| | |||| |||||||||||||||||
Sbjct: 129 tccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaatacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||| | |||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 69 aaacttaactagatacattcatatctaaacaaatctaagacaagaa-ttttggaacggag 11
Query: 158 ggagtat 164
|||||||
Sbjct: 10 ggagtat 4
Score = 60.0 bits (30), Expect = 1e-08
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| || |||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 77 tagatacatcaatttctagacaaagctaagacaagaa-ttttaggacggagggagtat 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
||||||||| |||||||||||||||||
Sbjct: 8 tccctccgttccaaaattcttgtctta 34
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 149 bits (75), Expect = 2e-35
Identities = 100/107 (93%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 41 ctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatactaaaa 100
||||||||||||||||||||||||| || ||| | |||| ||||||||||||||||||||
Sbjct: 125 ctccgtcccaaaattcttgtcttaaatt-gtctagaaatggatgtatctaaatactaaaa 67
Query: 101 cgtgactagatacattcatatctagacaaatctaagacaagaatttt 147
| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 66 catgactagatacattcatatttagacaaatctaagacaagaatttt 20
Score = 50.1 bits (25), Expect = 1e-05
Identities = 51/57 (89%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagta 163
||||||||| ||| ||||||||| | ||||||||||| ||||||||||||| |||||
Sbjct: 77 tagatacatccatttctagacaatt-taagacaagaa-ttttgggacggagagagta 131
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 45 gtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatcta 90
|||||||||||||||||||| |||||| ||| || |||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatcta 60
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 149 bits (75), Expect = 2e-35
Identities = 115/127 (90%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||||| ||||||||||||||| |||||| | |||| |||||||||||||||||
Sbjct: 8 tccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaatacta 67
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||| | |||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 68 aaacttaactagatacattcatatctaaacaaatctaagacaagaa-ttttggaacggag 126
Query: 158 ggagtat 164
| |||||
Sbjct: 127 gtagtat 133
Score = 60.0 bits (30), Expect = 1e-08
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| || |||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 60 tagatacatcaatttctagacaaagctaagacaagaa-ttttaggacggagggagtat 4
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 147 bits (74), Expect = 7e-35
Identities = 119/133 (89%), Gaps = 7/133 (5%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgta------tctaa 91
||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||
Sbjct: 135 tccctccgtcccaaaattcttgtcttaggtttgtctataaatggatgtaggtgtatctaa 76
Query: 92 atactaaaacgtgactagatacattcatatctagacaaatctaagacaagaatttttggg 151
|||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 75 ataccaaaacgtgactacatacattcatatctagacaaatctaagacaagaa-gtttggg 17
Query: 152 acggagggagtat 164
|||||||||||||
Sbjct: 16 acggagggagtat 4
Score = 60.0 bits (30), Expect = 1e-08
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 123 tagacaaatctaagacaagaatttttgggacggagggagtat 164
|||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 99 tagacaaacctaagacaagaa-ttttgggacggagggagtat 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
||||||||||||||| |||||||||||
Sbjct: 8 tccctccgtcccaaacttcttgtctta 34
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 131 bits (66), Expect = 4e-30
Identities = 112/126 (88%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||| ||||||||||||||||| ||||| | | || |||||||||||||||||
Sbjct: 129 tccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatctaaatacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|| | ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct: 69 aaccatgactagatacattcatatatagacaaatttaagacaagaa-ttttgggacggaa 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 tccgtcccaaaattcttgtcttaagtttgtc 72
|||||||||||||||||||||||| ||||||
Sbjct: 12 tccgtcccaaaattcttgtcttaaatttgtc 42
Score = 52.0 bits (26), Expect = 3e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| ||| | ||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 77 tagatacatccatgtgtagacaatgctaagacaagaa-ttttggaacggagggagtat 133
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 131 bits (66), Expect = 4e-30
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
|||||||||| |||| |||||||||| ||||||| |||||| | ||||||||||| |
Sbjct: 129 tccctccgtcttaaaaatcttgtcttaggtttgtctaaaaatggttgtatctaaatgtca 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttt 147
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaacgtgattagatacattcatatctagacaaatctaagacaagaatttt 20
Score = 44.1 bits (22), Expect = 7e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 123 tagacaaatctaagacaagaatttttgggacggagggagtat 164
|||||||| |||||||||| |||||| ||||||||||||||
Sbjct: 93 tagacaaacctaagacaag-atttttaagacggagggagtat 133
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 113 bits (57), Expect = 9e-25
Identities = 113/129 (87%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||||||||||||||||||||| |||||| | | || ||||||||||| |||||
Sbjct: 128 tccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaa-tacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||||||| | ||||||| | ||| |||| |||||||||||||||| ||||||||| ||
Sbjct: 69 aaacgtgagttgatacatccctatttagaaaaatctaagacaagaa-ttttgggacagaa 11
Query: 158 ggagtatgt 166
|||||||||
Sbjct: 10 ggagtatgt 2
Score = 91.7 bits (46), Expect = 3e-18
Identities = 56/58 (96%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaa-ttttgggacggagggagtat 132
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 111 bits (56), Expect = 4e-24
Identities = 109/124 (87%), Gaps = 2/124 (1%)
Strand = Plus / Minus
Query: 40 cctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatactaaa 99
||||||| ||||||||||||||||| |||| | | | | ||||||||||| |||||||
Sbjct: 126 cctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaa-tactaaa 68
Query: 100 acgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggaggg 159
|||||||| ||||||| | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 67 acgtgacttgatacatccgtatttagacaaatctaagacaagaa-ttttgggacggaggg 9
Query: 160 agta 163
||||
Sbjct: 8 agta 5
Score = 60.0 bits (30), Expect = 1e-08
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| | ||||||| ||||||||||||||||| |||||| ||||||| |||||
Sbjct: 76 tagatacatccgtatctaggcaaatctaagacaagaa-ttttggaacggaggaagtat 132
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
|||||||||||||||||||||||||||
Sbjct: 8 tccctccgtcccaaaattcttgtctta 34
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 107 bits (54), Expect = 6e-23
Identities = 110/126 (87%), Gaps = 2/126 (1%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
|||||| |||||||| ||||||||||| |||||| | | | |||||||||||| ||| |
Sbjct: 128 tccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaa-tacga 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
||| |||||| ||||||| | ||||||||||||||||||||||||| ||||||||| |||
Sbjct: 69 aaatgtgacttgatacatccgtatctagacaaatctaagacaagaa-ttttgggaccgag 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 58.0 bits (29), Expect = 5e-08
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 119 tatctagacaaatctaagacaagaatttttgggacggagggagta 163
||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 88 tatctagacaaatctaagacaagaa-atttgggacagagggagta 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
|||||| ||||||||||||||||||||
Sbjct: 8 tccctcggtcccaaaattcttgtctta 34
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 99.6 bits (50), Expect = 1e-20
Identities = 109/126 (86%), Gaps = 2/126 (1%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||| | ||||||||||||||||| |||||| | || | ||||||||||||||||
Sbjct: 128 tccctccattccaaaattcttgtcttagctttgtctagaactggatgtatctaaatact- 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
||| ||||||||||||||| |||||| |||||| |||| |||||| ||||| |||||||
Sbjct: 69 aaatttgactagatacattcgtatctaaacaaatataaggcaagaa-ttttgagacggag 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 52.0 bits (26), Expect = 3e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| || |||||||||| |||||||||||| |||||| | |||||||||||
Sbjct: 76 tagatacatccagttctagacaaagctaagacaagaa-ttttggaatggagggagtat 132
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 95.6 bits (48), Expect = 2e-19
Identities = 109/127 (85%), Gaps = 2/127 (1%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
|||||||||||||||||||| |||||| ||||| | | || |||| ||||| ||||
Sbjct: 128 tccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaac-acta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
|||| ||||||||||||| | ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 69 aaacatgactagatacatccgtatttagacaaatctatgacaagaa-ttttgggacggag 11
Query: 158 ggagtat 164
|||||||
Sbjct: 10 ggagtat 4
Score = 77.8 bits (39), Expect = 5e-14
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
|||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct: 76 tagacacattcatatctaaacaaatctaagacnagaa-ttttgggacggagggagtat 132
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 93.7 bits (47), Expect = 9e-19
Identities = 106/123 (86%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 37 ttccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatact 96
|||||||| ||||||||||||||||||| ||||| | | | |||||||||||| |||
Sbjct: 7 ttccctccatcccaaaattcttgtcttacatttgtttagataaagatgtatctaac-act 65
Query: 97 aaaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacgga 156
|||| || ||||||||||| | ||| ||||||||| ||||||||||| ||||||||||||
Sbjct: 66 aaaatgtaactagatacatccgtatttagacaaatttaagacaagaa-ttttgggacgga 124
Query: 157 ggg 159
|||
Sbjct: 125 ggg 127
Score = 63.9 bits (32), Expect = 8e-10
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 39 ccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatcta 90
||||||||||||||||||||||||||| |||||| ||| | ||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatcta 76
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 108/127 (85%), Gaps = 2/127 (1%)
Strand = Plus / Minus
Query: 37 ttccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatact 96
|||||||| ||||||||||||||||||| ||||| | | | ||||||||||| |||
Sbjct: 129 ttccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatctaac-act 71
Query: 97 aaaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacgga 156
|||| || |||| |||||| ||||| ||||||||| |||||||| |||||| ||||||||
Sbjct: 70 aaaatgtaactacatacatccatatttagacaaatttaagacaacaatttt-gggacgga 12
Query: 157 gggagta 163
|||||||
Sbjct: 11 gggagta 5
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtat 87
|||||||||||||||||| ||||||||| |||||| ||| || |||||||
Sbjct: 8 tccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 83.8 bits (42), Expect = 8e-16
Identities = 107/126 (84%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
|||||||||| |||||||||||||||| |||||| | | | | |||||| ||| |||||
Sbjct: 8 tccctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaa-tacta 66
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
||| ||||| |||||| | ||| ||||||||||||||||||||| |||||||| ||||
Sbjct: 67 aaatatgacttcatacatccgtatttagacaaatctaagacaagaa-ttttgggatggag 125
Query: 158 ggagta 163
||||||
Sbjct: 126 ggagta 131
Score = 63.9 bits (32), Expect = 8e-10
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 119 tatctagacaaatctaagacaagaatttttgggacggagggagtatgt 166
||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 48 tatctagacaaatgtaagacaagaa-ttttgagacggagggagtatgt 2
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtctta 64
||||||| |||||||||||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtctta 102
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 83.8 bits (42), Expect = 8e-16
Identities = 106/126 (84%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||||||||||||||||||||| | | | | | || |||| || |||||||||
Sbjct: 129 tccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaatacta 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggag 157
||| || ||||||||||| ||||||||||||||| || |||| || ||||| |||||||
Sbjct: 69 aaatgtaactagatacatccatatctagacaaattcaaaacaataa-ttttgagacggag 11
Query: 158 ggagta 163
||||||
Sbjct: 10 ggagta 5
Score = 56.0 bits (28), Expect = 2e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 117 catatctagacaaatctaagacaagaatttttgggacggagggagtat 164
|||||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 87 catatctaaaaacatctaagacaagaatttt-gggacggagggagtat 133
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 81.8 bits (41), Expect = 3e-15
Identities = 93/109 (85%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||||||||||||||||| || |||||| | | | ||||||||||| ||| |
Sbjct: 128 tccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatctaa-tacaa 70
Query: 98 aaacgtgactagatacattcatatctagacaaatctaagacaagaattt 146
|||||||||| ||||||||| | | ||||||||| ||||||||||||||
Sbjct: 69 aaacgtgacttgatacattcgtctttagacaaatttaagacaagaattt 21
Score = 58.0 bits (29), Expect = 5e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagta 163
||||||||| | |||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaagctacaacaagaa-ttttgggacggagggagta 131
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 77.8 bits (39), Expect = 5e-14
Identities = 49/51 (96%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 114 attcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
|||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 53 attcatatctagacaaatctaagacaagaa-ttttaggacggagggagtat 4
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttt 147
||||||||||||| |||||| ||| |||| |||||||||||
Sbjct: 64 tagatacattcatttctagataaacctaatacaagaatttt 104
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtctta 64
||||||||||| |||||||||||||||
Sbjct: 8 tccctccgtcctaaaattcttgtctta 34
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 73.8 bits (37), Expect = 8e-13
Identities = 105/125 (84%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 40 cctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatactaaa 99
||||||||||||||||||||||| ||| || | | | ||||||||||| ||||||
Sbjct: 126 cctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaac-actaaa 68
Query: 100 acgtgactagatacattcatatctagacaaatctaagacaagaatttttgggacggaggg 159
|||||||||||||||| ||||| |||| |||| |||||| |||| ||||| || ||||||
Sbjct: 67 acgtgactagatacatccatatttagagaaatttaagaccagaa-ttttgagatggaggg 9
Query: 160 agtat 164
|||||
Sbjct: 8 agtat 4
Score = 50.1 bits (25), Expect = 1e-05
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagta 163
||||||||| | |||||||| ||||| ||||||||| |||||||||||||| ||||
Sbjct: 76 tagatacatccgtatctagataaatcctagacaagaa-ttttgggacggaggtagta 131
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 67.9 bits (34), Expect = 5e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||| ||||||| |||| ||| ||||||||||||| |||||| ||| ||||||
Sbjct: 129 tccctccgttccaaaatacttgacttccatttgtccaaaaatggatgtacctatatacta 70
Query: 98 aaacgtgactagatacat 115
|||| || ||||||||||
Sbjct: 69 aaacatgtctagatacat 52
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 119 tatctagacaaatctaagacaagaatttt 147
|||||||||||||||||||||||||||||
Sbjct: 54 tatctagacaaatctaagacaagaatttt 82
Score = 54.0 bits (27), Expect = 7e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 106 ctagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
|||||||||| | |||| |||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 60 ctagatacat-cttatcaagacaaatctaagacaagaa-ttttggaacgaagggagtat 4
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 58.0 bits (29), Expect = 5e-08
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 119 tatctagacaaatctaagacaagaatttttgggacggagggagta 163
|||||| | |||||||||||||||| |||||||||||||||||||
Sbjct: 58 tatctaaataaatctaagacaagaa-ttttgggacggagggagta 101
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtctta 64
|||||||||||||||||||||||||||
Sbjct: 98 tccctccgtcccaaaattcttgtctta 72
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 119 tatctagacaaatctaagacaagaatttt 147
|||||||| ||||||||||||||||||||
Sbjct: 47 tatctagataaatctaagacaagaatttt 19
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 56.0 bits (28), Expect = 2e-07
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagg 158
||||||||| | |||||||| |||||||||||||| |||||||||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagacaag-ctttttgggacggagg 95
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 3e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 106 ctagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagta 163
|||||||||| | |||||||||||||| |||||||| | ||||| ||||||||||||
Sbjct: 75 ctagatacatccgtatctagacaaatccaagacaagta-atttggaacggagggagta 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 119 tatctagacaaatctaagacaag 141
|||||||||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaag 26
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 3e-06
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||| || ||||||||||| || |||| ||||||||||||||||| | | |||
Sbjct: 8 tccctccgtttcataattcttgtctcaaatttgctcaaaaatagatgtatct-atttcta 66
Query: 98 aaacgtgactagatacat 115
||| ||| ||||||||||
Sbjct: 67 aaaagtgtctagatacat 84
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum
(bread wheat)
Length = 134
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatcta 90
||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct: 8 tccctccgtcccaaaatgagtgtcttggatttgtccaaaaatggatgtatcta 60
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatcta 90
||||||||| ||| ||||||||||| || |||| |||||| | ||||||||||
Sbjct: 118 tccctccgttccataattcttgtctcaaatttgcccaaaattggatgtatcta 66
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 42 tccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatcta 90
||||| ||| ||||||||||| || |||| |||||||| ||||||||||
Sbjct: 114 tccgttccataattcttgtctcaaatttgcccaaaaatggatgtatcta 66
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 106 ctagatacattcatatctagacaaatctaagacaag 141
|||||||||| | ||||||||||||| |||||||||
Sbjct: 61 ctagatacatccgtatctagacaaatttaagacaag 26
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgta 167
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgta 1
>RF00906;MIR1122;AAAA02035140.1/47005-46870 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;ABRL01001045.1/1775-1911 65489:Oryza barthii
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa Indica
Group
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa Indica
Group
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 75 tttttgggacggagggagtatgt 97
>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
Indica Group
Length = 80
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgta 167
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgta 1
>RF00906;MIR1122;AC109595.2/23288-23368 39947:Oryza sativa Japonica
Group
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 58 tttttgggacggagggagtatgt 80
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa Japonica
Group
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgta 167
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgta 1
>RF00906;MIR1122;AP008218.1/1449043-1448953 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa Japonica
Group
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatgt 166
|||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatgt 2
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.1 bits (22), Expect = 7e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 107 tagatacattcatatctagacaaatctaagacaagaatttttgggacggagggagtat 164
||||||||| | |||||||| |||||| ||||||| ||| ||||||||||| |||||
Sbjct: 60 tagatacatccgtatctagataaatcttagacaagc-tttctgggacggaggtagtat 4
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgt 71
||||||||||||||||| ||||||||| |||||
Sbjct: 98 tccctccgtcccaaaataattgtcttaactttgt 65
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 38 tccctccgtcccaaaattcttgtcttaagtttgtccaaaaatagatgtatctaaatacta 97
||||||||| | | ||||||||||| || |||| |||||||| |||||||| | | |||
Sbjct: 118 tccctccgttcgataattcttgtctcaaatttgaccaaaaatgaatgtatct-attccta 60
Query: 98 aaacgtgactagatacat 115
||| ||| ||||||||||
Sbjct: 59 aaaagtgtctagatacat 42
>RF00906;MIR1122;AACV01022102.1/8073-7952 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatg 165
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatg 3
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 100 ttttgggacggagggagtatgt 121
>RF00906;MIR1122;AAAA02030464.1/12601-12722 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatg 165
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgt 2
>RF00906;MIR1122;AC128646.5/47101-47248 39947:Oryza sativa Japonica
Group
Length = 148
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02022032.1/23143-22996 39946:Oryza sativa
Indica Group
Length = 148
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tttttgggacggagggagtatg 165
||||||||||||||||||||||
Sbjct: 125 tttttgggacggagggagtatg 146
>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02028278.1/9457-9588 39946:Oryza sativa Indica
Group
Length = 132
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatg 165
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatg 3
>RF00906;MIR1122;AP005802.3/90428-90511 39947:Oryza sativa Japonica
Group
Length = 84
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 62 ttttgggacggagggagtatgt 83
>RF00906;MIR1122;AAAA02017224.1/4701-4826 39946:Oryza sativa Indica
Group
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 144 tttttgggacggagggagtatg 165
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtatg 3
>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttgggacggagggagtatgt 166
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatgt 2
