miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 8 ttgtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaa 67
||||||||| || |||||||||| |||||||| |||||||| ||| ||||| |||||||
Sbjct: 2 ttgtactccttctgtaaagaaatataagagcgtctagatcactaaa-gtagttatctaaa 60
Query: 68 cgcccttatatttctttacggagggagta 96
| | |||||||||||||||||||||||||
Sbjct: 61 cactcttatatttctttacggagggagta 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
|||||||||| |||||||||| ||||| |||||||| || | |||| ||||| ||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactt-tagtgatctagacgc 31
Query: 71 ccttatatttctttacggagggagtac 97
||||||||||||||| || |||||||
Sbjct: 30 tcttatatttctttacagaaggagtac 4
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
|||||||||| |||||||||| ||||||||||||| ||| ||| ||||| ||||||| |
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcactaaa-gtagttatctaaatg 62
Query: 70 cccttatatttctttacggagggagtac 97
| |||||||||||||| ||||||||||
Sbjct: 63 ctcttatatttctttatagagggagtac 90
Score = 67.9 bits (34), Expect = 2e-11
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 9 tgtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaac 68
||||||||||| ||||||||||| |||||| ||||||| || | |||| |||||||
Sbjct: 91 tgtactccctctataaagaaatataagagcatttagataactactt-tagtgctctaaac 33
Query: 69 gcccttatatttctttacggagggagtact 98
|| ||||||||||||||| |||||||||||
Sbjct: 32 gctcttatatttctttaccgagggagtact 3
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 22 taaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttc 81
|||||||||| ||||||||||||||||| || ||||| |||||||||| ||||||||||
Sbjct: 16 taaagaaatataagagcgtttagatcactgaa-gtagtgatctaaacgctcttatatttc 74
Query: 82 tttacggaggg 92
||||| |||||
Sbjct: 75 tttacagaggg 85
Score = 54.0 bits (27), Expect = 4e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 22 taaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttc 81
|||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||
Sbjct: 78 taaagaaatataagagcgtttagatcactacttc-agtgatctaaacgctcttatatttc 20
Query: 82 tttacggagggagta 96
||||| |||| ||||
Sbjct: 19 tttacagaggtagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 75.8 bits (38), Expect = 1e-13
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaa--gtagtcatctaaac 68
|||||| ||| |||||||||| |||||||| |||||||| |||| ||||| ||||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaac 33
Query: 69 gcccttatatttctttacgga 89
| ||||||||||||||||||
Sbjct: 32 gttcttatatttctttacgga 12
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/88 (85%), Gaps = 7/88 (7%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
||||||||| |||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca-------tagtgatctaaacgc 57
Query: 71 ccttatatttctttacggagggagtact 98
||||||||||||||| |||||||||||
Sbjct: 58 tcttatatttctttacagagggagtact 85
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/87 (83%), Gaps = 7/87 (8%)
Strand = Plus / Minus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
|||||||||| |||||||||| ||||||||||||||||| | | |||||||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcacta-------tgatctaaacg 32
Query: 70 cccttatatttctttacggagggagta 96
| ||||||||||||||| |||||||||
Sbjct: 31 ctcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
|||||||||| |||| ||||| ||| ||||||||||| | |||| |||| |||||||||
Sbjct: 4 gtactccctctgtaaacaaatataagggcgtttagatctctaaaa-tagtgatctaaacg 62
Query: 70 cccttatatttctttacggagggagtact 98
| ||||||||||||||| |||||| ||||
Sbjct: 63 ctcttatatttctttactgagggactact 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 22 taaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttc 81
|||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 78 taaagaaatataagagcgtttagatcactattt-tagagatctaaacgcccttatatttg 20
Query: 82 tttacggagggagtacta 99
||||| ||||||||||||
Sbjct: 19 tttacagagggagtacta 2
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 9 tgtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaac 68
||||||||||| ||||| |||| ||||| ||||||||||| |||| |||| |||||||
Sbjct: 3 tgtactccctctataaaccaatataagagtgtttagatcactaaaa-tagtgttctaaac 61
Query: 69 gcccttatatttctttacggagggagta 96
|| |||||||| |||||||||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 9 tgtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaac 68
|||||||||||| || ||||||| |||| ||||||||||| ||| ||||| |||||||
Sbjct: 3 tgtactccctccgtacagaaatataagaatgtttagatcactaaa-gtagttatctaaat 61
Query: 69 gcccttatatttctttacggagggagta 96
| ||||||||||||||| |||||||||
Sbjct: 62 gatcttatatttctttacagagggagta 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 72 cttatatttctttacggagggagtac 97
||||||||||| ||||||||||||||
Sbjct: 29 cttatatttctgtacggagggagtac 4
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 33 aagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttctttacggaggg 92
||||||||||||||||| ||| ||||| |||||||||| |||||||| |||||||||||
Sbjct: 67 aagagcgtttagatcactaaa-gtagtaatctaaacgctcttatattaatttacggaggg 9
Query: 93 agta 96
||||
Sbjct: 8 agta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 22 taaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttc 81
|||| ||||| ||||||||| ||||||| || ||||| | |||||||| ||||||||||
Sbjct: 78 taaacaaatataagagcgttcagatcactcaa-gtagtgacctaaacgctcttatatttc 20
Query: 82 tttacggagggagta 96
|||||||||||||||
Sbjct: 19 tttacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcac 49
|||||||||| |||||||||| |||||||||||| ||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcac 43
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
||||||||| |||| |||| |||||| |||||||||| |||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaa-tagtaatctaaacgc 63
Query: 71 ccttatatttctttacggagggagta 96
|||||||| |||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
|||||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaa-tagtgatctaaacgc 31
Query: 71 ccttatatttctttacggagggagtacta 99
|||||||| ||||| ||||||||||||
Sbjct: 30 tcttatattagtttacagagggagtacta 2
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tctaaacgcccttatatttctttacggagggagta 96
||||||||| |||||||| |||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 39 gtttagatcaccaaaagtagtcatctaaacgcccttatatttctttacggagggagtac 97
||||||||||| ||| ||||| |||||||| | ||||||||||||||| ||||||||||
Sbjct: 31 gtttagatcactaaa-gtagtgatctaaacactcttatatttctttacagagggagtac 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcac 49
|||||||||| |||||||||| ||||| |||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcac 49
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 28 aatagaagagcgtttagatcaccaaaagtagtcatctaaacgcccttatatttctttacg 87
|||| ||||||||||||||||| |||| |||| ||| |||| | |||||||| ||||||
Sbjct: 72 aatataagagcgtttagatcactaaaa-tagtgatcaaaacactcttatattaatttacg 14
Query: 88 gagggagtac 97
||||||||||
Sbjct: 13 gagggagtac 4
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 56 tagtcatctaaacgcccttatatttctttacggagggagta 96
|||| ||||||| || |||||||||||||||||||||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggagggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
||||||||| |||| |||| |||||||||||||||| | |||||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatca-ctaaagtagtgatctaaacgc 63
Query: 71 ccttatatt 79
||||||||
Sbjct: 64 tcttatatt 72
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
||||||||||| |||| |||| |||||||||||| |||| |||| |||| ||||||| |
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaa-tagtgatctaaatg 62
Query: 70 cccttatatttctttacggagggagta 96
| |||||||| ||||| |||| ||||
Sbjct: 63 ctcttatattagtttacagaggaagta 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 63 ctaaacgcccttatatttctttacggagggagtacta 99
|||||||| |||||||| ||||||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttacggagggagtacta 2
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 75/91 (82%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaa-----agtagtcatcta 65
||||||||| |||||||||| |||| |||||||||||| ||| |||||| |||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 66 aacgcccttatatttctttacggagggagta 96
|| | ||||||||||||| ||||||||||
Sbjct: 65 aatgatcttatatttctttgtggagggagta 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 56 tagtcatctaaacgcccttatatttctttacggagggagta 96
|||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcac 49
||||||||||| ||||||||| |||| | ||||||||||
Sbjct: 95 tactccctccacaaagaaatataagatcatttagatcac 57
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 7 tttgtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaa 66
||||||||||||| |||| |||| || | | |||||||||| ||| ||||| ||||||
Sbjct: 93 tttgtactccctctgtaaactaatataaaaacatttagatcactaaa-gtagtaatctaa 35
Query: 67 acgcccttatatttctttacggagggagta 96
|| | |||||||| |||||||||||||||
Sbjct: 34 acactcttatattagtttacggagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 74/89 (83%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
|||||||| |||||| |||| || ||||||||||||| || ||||| ||||||| ||
Sbjct: 5 tactcccttcataaactaatataaaagcgtttagatcattaa--gtagtgatctaaatgc 62
Query: 71 ccttatatttctttacggagggagtacta 99
|||||||| ||||| ||||||||||||
Sbjct: 63 tcttatattagtttacagagggagtacta 91
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 62 tctaaacgcccttatatttctttacggagggagtacta 99
||||||||| |||||||| ||||||||||||||||||
Sbjct: 53 tctaaacgctcttatattagtttacggagggagtacta 90
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/71 (84%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 28 aatagaagagcgtttagatcaccaaa--agtagtcatctaaacgcccttatatttcttta 85
|||| ||||||||||||||||| | | |||||| |||||||||| || |||||| || |
Sbjct: 75 aatataagagcgtttagatcactagagtagtagtgatctaaacgctctcatatttattca 16
Query: 86 cggagggagta 96
| |||||||||
Sbjct: 15 cagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 53 aagtagtcatctaaacgcccttatatttctttacggagggagta 96
||||||| ||||||| || |||||||| |||||||||||||||
Sbjct: 44 aagtagtgatctaaatgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
||||||||||| |||| |||| || |||||||||| || |||| |||| |||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaa-tagtgatctaaacg 62
Query: 70 cccttatatttctttacggagggagta 96
|||||||| ||||| |||||||||
Sbjct: 63 ttcttatattagtttacagagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
|||||||||| |||| |||| ||||| |||||||| || |||| |||| ||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaa-tagt--tctaaacg 60
Query: 70 cccttatatttctttacggagggagtacta 99
| ||||||| ||||||||||||||||||
Sbjct: 61 ctattatattagtttacggagggagtacta 90
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 10 gtactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacg 69
|||||||||||||||| |||| |||||| ||||||| | |||| |||| ||||||| |
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaa-tagtgatctaaatg 32
Query: 70 cccttatatttctttacggagggagta 96
| ||||||| ||||| |||||||||
Sbjct: 31 cttttatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 11 tactccctccataaagaaatagaagagcgtttagatcaccaaaagtagtcatctaaacgc 70
||||||||| |||| |||| |||||| |||| |||| |||| |||| |||||||| |
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaa-tagtgatctaaacac 31
Query: 71 ccttatatttctttacggagggagta 96
|||||||| |||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
