miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 172 bits (87), Expect = 7e-43
Identities = 101/103 (98%), Gaps = 2/103 (1%)
Strand = Plus / Minus
Query: 8 gttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagt 46
Query: 68 tgt-ctaagcttaaagacacttattttaggaccgagggaatat 109
||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 45 tgtactaagctt-aagacacttattttaggaccgagggaatat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 86/95 (90%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42
Query: 71 ctaagcttaaagacacttattttaggaccgaggga 105
|||||||| ||||||||||||| |||| ||||||
Sbjct: 41 ctaagctt-gagacacttattttgggacggaggga 8
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| ||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgt 43
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgt 43
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 93.7 bits (47), Expect = 5e-19
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgt 42
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataactgtctcaactttgta 42
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42
Query: 71 ctaagcttaaagacacttatttt 93
||||| || ||||||||||||||
Sbjct: 41 ctaagatt-aagacacttatttt 20
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
|||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataagtgtct 32
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 85/95 (89%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
||||||||||||| |||||||| |||||||||||||||||| || |||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42
Query: 71 ctaagcttaaagacacttattttaggaccgaggga 105
|||||||| ||||||||||||| |||| ||||||
Sbjct: 41 ctaagctt-gagacacttattttgggacggaggga 8
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| ||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 75/83 (90%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
|||| |||||||| |||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42
Query: 71 ctaagcttaaagacacttatttt 93
||||||| ||||||||||||||
Sbjct: 41 ttaagctt-aagacacttatttt 20
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 2 ttatactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagtt 61
Query: 69 gt-ctaagctt 78
|| ||||||||
Sbjct: 62 gtactaagctt 72
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 83.8 bits (42), Expect = 5e-16
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
|||||||||||||||| ||||||||||||||||| |||||| || || ||||||||||||
Sbjct: 152 ttatactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagtt 93
Query: 69 gt 70
||
Sbjct: 92 gt 91
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 85/97 (87%), Gaps = 2/97 (2%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt- 68
||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||| ||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaatta 44
Query: 69 gtctaagcttaaagacacttattttaggaccgaggga 105
|||||||| ||||||||||||| |||| ||||||
Sbjct: 43 cactaagctt-gagacacttattttgggacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
|||||||||| || |||||||| ||||||||||||||| || |||||||||||| || |
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 71 ctaagcttaaagacacttattttaggaccgagggaatatt 110
|||||| | |||||||||||||| |||| |||||| ||||
Sbjct: 41 ctaagc-tcaagacacttattttgggacggagggagtatt 3
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 84/96 (87%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| ||||||||||||||||||||| || ||| ||||||| ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttat 43
Query: 71 -ctaagcttaaagacacttattttaggaccgaggga 105
|||||||| |||||| ||||||| |||| ||||||
Sbjct: 42 actaagctt-aagacagttattttgggacggaggga 8
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/94 (87%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
||||||||||||| ||||||| |||||| ||||||||| |||||| ||| ||| ||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42
Query: 71 ctaagcttaaagacacttattttaggaccgaggg 104
|||||||| |||||||||||||| |||| |||||
Sbjct: 41 ctaagctt-aagacacttattttgggacggaggg 9
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||| |||||||| ||||||||||||||| ||||| || |||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgt 63
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 83/96 (86%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| ||||||||||||||||||||| || ||| |||| || ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttat 43
Query: 71 -ctaagcttaaagacacttattttaggaccgaggga 105
|||||||| |||||| ||||||| |||| ||||||
Sbjct: 42 actaagctt-aagacagttattttgggacggaggga 8
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| || |
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42
Query: 71 ctaagcttaaagacacttatttta 94
|||||||| |||||||||||||||
Sbjct: 41 ctaagctt-aagacacttatttta 19
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||| || |||||||| ||||||||||||||| || || ||||||||||||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 69.9 bits (35), Expect = 7e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||| || |||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgt 43
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaa 42
|||||| ||||||| |||||||||||||||||
Sbjct: 4 atactcactccgtcccaaaataactgtctcaa 35
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgt 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||||| |||||||| ||||| ||||||||| || || ||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgt 43
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 26 caaaataactgtctcaactttgtattagctctagtacaaagttgt-ctaagctt 78
|||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 87 caaaataagtgtctcaactttgtactagctctactacaaagttgtactaagctt 34
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgtctcaa 42
|||||||||||| ||||||||||||||||||||
Sbjct: 3 tatactccctccatctcaaaataactgtctcaa 35
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 63.9 bits (32), Expect = 4e-10
Identities = 83/96 (86%), Gaps = 3/96 (3%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| |||||||| |||||| |||||||| || |||||||| ||| ||||
Sbjct: 101 atactccctccgtcccaaaataagtgtctc-actttgtactaactctagtataaaattgt 43
Query: 71 -ctaagcttaaagacacttattttaggaccgaggga 105
||||| || ||||||||||||| |||| ||||||
Sbjct: 42 actaaggtt-gagacacttattttgggacggaggga 8
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaac 43
|||||||||||||||| |||||||| |||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||| |||||| |||||||| |||||||||||| || ||||| ||||||||| ||||
Sbjct: 4 atactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgt 63
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtatta 52
||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 105 ttatacttcctccgtctcaaaataactgtcttaactttatatta 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgt 37
|||||||||||||| |||||||||||||
Sbjct: 3 tatactccctccgtttcaaaataactgt 30
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt- 70
|||||| |||||| |||||||| |||||||| ||| | || |||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 71 ctaagcttaaagacacttattttaggaccgaggga 105
||||| || ||||||||||||| |||| ||||||
Sbjct: 65 ctaaggtt-gagacacttattttgggacggaggga 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaac 43
||||||||||||||| |||||||| |||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||||||||||| | ||||| |||| | ||||||||||| ||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgt 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgt 63
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtc 38
||||||||||||| |||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
||||||| ||||||| |||||||| || |||||||||||| || || ||||||||||||
Sbjct: 93 ttatacttcctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagtt 34
Query: 69 g 69
|
Sbjct: 33 g 33
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||| |||||||| || ||||||||||||
Sbjct: 103 ttatactccctccgtcccaaaataagtgactcaactttgta 63
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataa 26
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaactttgta 42
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
||||||||||| || |||||||| ||| | || |||||||||||| ||||| ||||||
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagtt 45
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 69
||||||||||||| |||| ||| || ||||||||| || || || |||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagttg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgta 49
||||||||||| ||| |||||||| || ||||||||||||
Sbjct: 3 tatactccctctgtcccaaaataagtgactcaactttgta 42
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||| | |||||| || ||||||||||||
Sbjct: 106 ttatactccctccgtcccgaaataagtgactcaactttgta 66
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataactgtctcaacttt 46
||||||||||| |||||||| ||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttt 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactt 45
|||||| |||||||| |||||||| |||||||||||
Sbjct: 91 tatacttcctccgtcccaaaataagtgtctcaactt 56
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 69
|||||||||||| | ||||||| || |||||||||||| || || |||||||||||||
Sbjct: 92 tatactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagttg 33
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagct 55
||||||||| || |||||||||||||| ||||||||| |||||
Sbjct: 5 tactccctctgttccaaaataactgtcttaactttgtactagct 48
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataa 33
||||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaataa 95
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaata 32
||||||||||||||||||||||||
Sbjct: 160 ttatactccctccgtctcaaaata 137
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 1 atactccctccgtctcaaaataa 23
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct-caactttgta 49
||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctccaactttgta 43
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
Group
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaata 32
|||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaata 106
>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaata 32
||||||||||||||||||||||
Sbjct: 154 atactccctccgtctcaaaata 133
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgta 49
||||||||||||| |||| ||| || ||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaactttgta 42
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| || |||||
Sbjct: 115 ttatactccctccgtcccaaaataagtgactcaa 82
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtc 38
|||||||||||||||| |||||||| ||||
Sbjct: 105 ttatactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
Japonica Group
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaat 31
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtctcaaaat 24
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataa 33
||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72
