miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 2 taattactccctctgtaaactaatataagagtgtttggacccaaccgctcttatattagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taattactccctctgtaaactaatataagagtgtttggacccaaccgctcttatattagt 60
Query: 62 ttaccgagggagtacctt 79
||||||||||||||||||
Sbjct: 61 ttaccgagggagtacctt 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgtttggacccaaccgctcttatattagtttac 65
||||||||| ||||||||||||||||| | |||| |||| | |||||||||||||||||
Sbjct: 74 tactccctcggtaaactaatataagagcggttgggtccaaacactcttatattagtttac 15
Query: 66 cgagggagta 75
|||||||||
Sbjct: 14 agagggagta 5
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 49 ctcttatattagtttaccgagggagtac 76
||||||||||||||||| ||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataa 66
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 49 ctcttatattagtttaccgagggagtac 76
||||||||||||||||| ||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtac 4
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagtac 76
|||| |||||||||||||| ||||||||||
Sbjct: 59 cgctattatattagtttacggagggagtac 88
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 taattactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||||||
Sbjct: 1 taattactccctctgtaaactaatataagag 31
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 5 ttactccctctgtaaactaatataagagtgttt 37
|||||||||| ||||||||||||||||| ||||
Sbjct: 90 ttactccctccgtaaactaatataagagcgttt 58
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 61 cgctcttatattagtttacggagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 48 gctcttatattagtttaccgagggagta 75
|||||||||||||||||| |||||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 attactccctctgtaaactaatataagagtgttt 37
||||||||||| ||||||||||||||||||||||
Sbjct: 3 attactccctccgtaaactaatataagagtgttt 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataa 66
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 49 ctcttatattagtttaccgagggagta 75
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgttt 36
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 gctcttatattagtttaccgagggagta 75
||||||||||||||||||||||||||||
Sbjct: 62 gctcttatattagtttaccgagggagta 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 49 ctcttatattagtttaccgagggagta 75
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagag 63
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 96 tactccctctgtaaactaatataagagcgttt 65
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagtac 76
||||||||||||||||||| ||||||||||
Sbjct: 68 cgctcttatattagtttacagagggagtac 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataagag 32
|||||||||||||||||||||||
Sbjct: 9 ccctctgtaaactaatataagag 31
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 4 attactccctctgtaaactaatataaga 31
||||||||||||||||||||||||||||
Sbjct: 91 attactccctctgtaaactaatataaga 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagtacct 78
|||| |||||||||||||| ||||||||||||
Sbjct: 33 cgcttttatattagtttacggagggagtacct 2
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 tcttatattagtttaccgagggagta 75
|||||||||||||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttt 36
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 33 cgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagt 33
||||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagt 32
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 49 ctcttatattagtttaccgagggagtac 76
||||||||||||||||| ||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttt 36
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 33 cgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttt 36
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagtac 76
||||||||||||||||||| ||||||||||
Sbjct: 33 cgctcttatattagtttacagagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctcttatattagtttaccgagggagta 75
|||||||||||||||||| |||||||||
Sbjct: 107 gctcttatattagtttacggagggagta 134
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 134 tactccctccgtaaactaatataagag 108
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
|||||||||||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataaaagtgttt 36
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagtac 76
||||||||||||||||||| ||||||||||
Sbjct: 59 cgctcttatattagtttacggagggagtac 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||| ||||
Sbjct: 87 tactccctccgtaaactaatataagagcgttt 56
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttt 36
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagtac 76
||||||||||||||||||| ||||||||||
Sbjct: 33 cgctcttatattagtttacagagggagtac 4
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 61 cgctcttatattagtttacggagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||| ||||
Sbjct: 89 tactccctccgtaaactaatataagagcgttt 58
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagag 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 33 cgctcttatattagtttacagagggagta 5
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 61 cgctcttatattagtttacagagggagta 89
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 48 gctcttatattagtttaccgagggagta 75
|||||||||||||||||| |||||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 48 gctcttatattagtttaccgagggagtac 76
|||||||||||||||||| ||||||||||
Sbjct: 32 gctcttatattagtttacagagggagtac 4
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagtacc 77
|||||||||||||||||| |||||||||||
Sbjct: 68 cgctcttatattagtttaaggagggagtacc 98
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 34 cgctcttatattagtttacggagggagta 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 48 gctcttatattagtttaccgagggagta 75
|||||||||||||||||| |||||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 62 tactccctccgtaaactaatataagag 36
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 88 tactccctctgtaaactaatataagag 62
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 gctcttatattagtttaccgagggagtac 76
|||||||||||||||||| ||||||||||
Sbjct: 61 gctcttatattagtttacagagggagtac 89
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgtttgga 40
||||||||||||||| ||||||||||| |||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttgga 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 42 ccaaccgctcttatattagtttaccgagggagta 75
|||| ||||||||||||| ||||| |||||||||
Sbjct: 38 ccaaacgctcttatattaatttacagagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaga 31
||||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaga 64
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaga 31
|||||||||||||||||||||||
Sbjct: 8 tccctctgtaaactaatataaga 30
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tcttatattagtttaccgagggagtac 76
|||||||||||||||| ||||||||||
Sbjct: 64 tcttatattagtttacagagggagtac 90
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagtac 76
||||||||||||||||||| ||||||||||
Sbjct: 33 cgctcttatattagtttacggagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||| ||||
Sbjct: 5 tactccctccgtaaactaatataagagcgttt 36
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
|||| ||||||||||||||||||||||
Sbjct: 89 tacttcctctgtaaactaatataagag 63
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaga 31
||||||||||||||||||||||||||
Sbjct: 91 tactccctctgtaaactaatataaga 66
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaga 31
|||||||||||||||||||||||
Sbjct: 8 tccctctgtaaactaatataaga 30
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tcttatattagtttaccgagggagtac 76
|||||||||||||||| ||||||||||
Sbjct: 66 tcttatattagtttacagagggagtac 92
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagta 75
||||||||||||||||||| |||||||||
Sbjct: 61 cgctcttatattagtttacggagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
|||||||||| ||||| |||||||||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgttt 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||| ||||
Sbjct: 89 tactccctccgtaaactaatataagagcgttt 58
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||| ||||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttt 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 cgctcttatattagtttaccgagggagt 74
||||||||||||||||||| ||||||||
Sbjct: 61 cgctcttatattagtttactgagggagt 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataagagtgttt 37
|||||||| ||||||||||||||||| ||||
Sbjct: 88 actccctcagtaaactaatataagagcgttt 58
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 aattactccctctgtaaactaatataa 29
|||||||||||| ||||||||||||||
Sbjct: 92 aattactccctccgtaaactaatataa 66
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 gctcttatattagtttaccgagggagtacctt 79
||||||||||||||||| |||||||||||||
Sbjct: 62 gctcttatattagtttatggagggagtacctt 93
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctcttatattagtttaccgagggagta 75
|||||||||||||||||| |||||||||
Sbjct: 60 gctcttatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagag 61
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagagtgttt 37
||||||||||||||| |||||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgttt 56
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataagagtgttt 37
|||||||| ||||||||||||||||| ||||
Sbjct: 88 actccctccgtaaactaatataagagagttt 58
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ctcttatattagtttaccgagggagt 74
||||||||||||||||| ||||||||
Sbjct: 63 ctcttatattagtttacggagggagt 88
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ttactccctctgtaaactaatataaga 31
|||||||||| ||||||||||||||||
Sbjct: 4 ttactccctccgtaaactaatataaga 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 50 tcttatattagtttaccgagggagta 75
|||||||||||||||| |||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgaggga 72
||||||||||||||||||| ||||||
Sbjct: 33 cgctcttatattagtttacggaggga 8
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 47 cgctcttatattagtttaccgagggagtac 76
|||||||||||| ||||||||||||||||
Sbjct: 33 cgctcttatatttctttaccgagggagtac 4
