miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 10 tactcccttcattccaaattaagtgacccaaatttagaactaagttagtacaaatatagt 69
|||||||| | | ||||| |||||| | ||||||||| |||||||||||||||||||| |
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 70 actaaagcaacggcacttattttgggacggagggaatataa 110
|||| |||| || |||||||||||||||||||||| |||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagtataa 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 67.9 bits (34), Expect = 3e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 29 taagtgacccaaatttagaactaagttagtacaaatatagtactaaagcaacggcactta 88
|||||| | ||||||||| | |||||||||| |||| |||||||||| || || ||||||
Sbjct: 24 taagtgtcacaaatttagtattaagttagtataaatttagtactaaaacagcgacactta 83
Query: 89 ttttgggacg 98
||||||||||
Sbjct: 84 ttttgggacg 93
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 60.0 bits (30), Expect = 7e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 23 ccaaattaagtgacccaaatttagaactaagttagtacaaatatagtactaaagcaacgg 82
||||| |||||| | |||||||| |||||| ||||||||||| | ||||||| || ||
Sbjct: 89 ccaaaataagtgtcacaaatttataactaaattagtacaaattttatactaaatcagcga 30
Query: 83 cacttattttgggacggaggga 104
||||||||||| |||||||||
Sbjct: 29 cacttattttgatacggaggga 8
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 68 gtactaaagcaacggcacttattttgggacggagggaatat 108
|||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 44 gtactaaatcaatgacacttattttgggacggagggaatat 4
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 56.0 bits (28), Expect = 1e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 29 taagtgacccaaatttagaactaagttagtacaaatatagtactaaagcaacggcactta 88
|||||||| || ||| || ||||| | ||||||||| | |||||| | ||||| ||||||
Sbjct: 24 taagtgacgcatattcagtactaaatgagtacaaattttgtactagatcaacgacactta 83
Query: 89 ttttgggacggaggga 104
|||| |||||||||||
Sbjct: 84 ttttaggacggaggga 99
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 68 gtactaaagcaacggcacttattttgggacggaggga 104
|||||||||||| | |||||||||||||| |||||||
Sbjct: 62 gtactaaagcaaagacacttattttgggatggaggga 98
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggagggaatataa 110
|||||||||||||||||||||| |||||
Sbjct: 29 cacttattttgggacggagggagtataa 2
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 76 cacttattttgggacggaggga 97
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggagggaatataa 110
|||||||||||||||||||||| |||||
Sbjct: 88 cacttattttgggacggagggagtataa 115
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggagggaatataa 110
|||||||||||||||||||||| |||||
Sbjct: 76 cacttattttgggacggagggagtataa 103
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggagggaatataa 110
|||||||||||||||||||||| |||||
Sbjct: 29 cacttattttgggacggagggagtataa 2
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggagggaatataa 110
|||||||||||||||||||||| |||||
Sbjct: 29 cacttattttgggacggagggagtataa 2
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 219 gcacttattttgggacggaggga 241
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa Japonica
Group
Length = 246
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AACV01000175.1/175-418 39947:Oryza sativa Japonica
Group
Length = 244
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AAAA02015465.1/824-1069 39946:Oryza sativa Indica
Group
Length = 246
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 220 gcacttattttgggacggaggga 242
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa Japonica
Group
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 215 gcacttattttgggacggaggga 237
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 215 gcacttattttgggacggaggga 237
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa Japonica
Group
Length = 245
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AAAA02012959.1/2038-1794 39946:Oryza sativa Indica
Group
Length = 245
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 215 gcacttattttgggacggaggga 237
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 215 gcacttattttgggacggaggga 237
>RF01058;MIR806;AAAA02007955.1/54103-53859 39946:Oryza sativa Indica
Group
Length = 245
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 27 gcacttattttgggacggaggga 5
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggagggaatata 109
|||||||||||||||||||||| ||||
Sbjct: 29 cacttattttgggacggagggagtata 3
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggagggaatata 109
|||||||||||||||||||||| ||||
Sbjct: 77 cacttattttgggacggagggagtata 103
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggagggaatata 109
|||||||||||||||||||||| ||||
Sbjct: 29 cacttattttgggacggagggagtata 3
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 68 gtactaaagcaacggcacttattttgggacggagggaatataa 110
|||||||| || || ||||||||||||||||| |||| |||||
Sbjct: 43 gtactaaatcagcgacacttattttgggacggtgggagtataa 85
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 68 gtactaaagcaacggcacttattttgggacggagg 102
|||||||| || || ||||||||||||||||||||
Sbjct: 67 gtactaaatcagcgacacttattttgggacggagg 101
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggagggaatata 109
|||||||||||||||||||||| ||||
Sbjct: 77 cacttattttgggacggagggagtata 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 82 gcacttattttgggacggaggga 104
|||||||||||||||||||||||
Sbjct: 30 gcacttattttgggacggaggga 8
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa Japonica
Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 26 cacttattttgggacggaggga 5
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gatgtactcccttcattccaaa 27
||||||||||||||||||||||
Sbjct: 103 gatgtactcccttcattccaaa 82
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 87 cacttattttgggacggaggga 108
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 87 cacttattttgggacggaggga 108
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacggaggga 8
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 cacttattttgggacggaggga 104
||||||||||||||||||||||
Sbjct: 77 cacttattttgggacggaggga 98
>RF00906;MIR1122;AAAA02021026.1/44639-44772 39946:Oryza sativa
Indica Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 tattttgggacggagggaatat 108
||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggaatat 4
>RF00906;MIR1122;AAAA02019539.1/50507-50413 39946:Oryza sativa
Indica Group
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 ttattttgggacggagggaata 107
||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggaata 5
>RF00906;MIR1122;AP004994.2/80471-80627 39947:Oryza sativa Japonica
Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 tattttgggacggagggaatat 108
||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggaatat 4
>RF00906;MIR1122;AP008210.1/8188364-8188253 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 tattttgggacggagggaatat 108
||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggaatat 4
>RF00906;MIR1122;AP004256.3/9033-9136 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttattttgggacggagggaata 107
||||||||||||||||||||||
Sbjct: 79 ttattttgggacggagggaata 100
>RF00906;MIR1122;AACV01019763.1/6220-6087 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttattttgggacggagggaata 107
||||||||||||||||||||||
Sbjct: 109 ttattttgggacggagggaata 130
>RF00906;MIR1122;AAAA02006934.1/24563-24655 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 tattttgggacggagggaatat 108
||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggaatat 4
>RF00906;MIR1122;AAAA02007860.1/10023-9886 39946:Oryza sativa Indica
Group
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttattttgggacggagggaata 107
||||||||||||||||||||||
Sbjct: 113 ttattttgggacggagggaata 134
