miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02000051.1/89024-89224 3988:Ricinus communis
(castor bean)
Length = 201
Score = 77.8 bits (39), Expect = 6e-14
Identities = 71/81 (87%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 123 tgcgcagcttaagggtttgcatgactcaggagacgtgtttgccttctccattaaacctta 182
||||||||||||||||||||||||| |||||||||||| ||||| || || |||||
Sbjct: 112 tgcgcagcttaagggtttgcatgacctgggagacgtgtttcccttccccttt---cctta 168
Query: 183 cttggattgaagggagctcct 203
||||||||||||||||||||
Sbjct: 169 attggattgaagggagctcct 189
>RF00638;MIR159;ABIM01022236.1/30966-30764 3649:Carica papaya
(papaya)
Length = 203
Score = 61.9 bits (31), Expect = 4e-09
Identities = 66/77 (85%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 126 gcagcttaagggtttgcatgactcaggagacgtgtttgccttctccattaaaccttactt 185
||||||||||||||||||||| || |||| ||| |||||||||| || |||| |||
Sbjct: 117 gcagcttaagggtttgcatgattcgagagatgtgcttgccttctctttt---cctttctt 173
Query: 186 ggattgaagggagctcc 202
|||||||||||||||||
Sbjct: 174 ggattgaagggagctcc 190
>RF00638;MIR159;ABIM01022236.1/31201-31004 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 138 tttgcatgactcaggagacgtgtttgcctt 167
|||||||||||||||||| ||| |||||||
Sbjct: 124 tttgcatgactcaggagatgtgcttgcctt 153
