miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
          trichocarpa
          Length = 98

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 7  ctagtagttgaagctgccagcatgatctgagctttccttaat 48
          |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6  ctagtagttgaagctgccagcatgatctgaactttccttaat 47




>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
          (papaya)
          Length = 103

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 12 agttgaagctgccagcatgatctgagcttt 41
          ||||||||||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatctgagcttt 40




>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
          (sorghum)
          Length = 134

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 4  cctctagtagttgaagctgccagcatgatctga 36
          |||||||||| ||||||||||||||||||||||
Sbjct: 3  cctctagtagctgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
          lycopersicum
          Length = 104

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 7  ctagtagttgaagctgccagcatgatctgagctttcctt 45
          |||| ||||||||||||||||||||||| | ||||||||
Sbjct: 6  ctagcagttgaagctgccagcatgatctaaactttcctt 44




>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
          (papaya)
          Length = 94

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 agttgaagctgccagcatgatctgagctttcctt 45
          ||||||||||||||||||||||| | ||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcctt 44




>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
          trichocarpa
          Length = 94

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 3  acctctagtagttgaagctgccagcatgatctgagctttcct 44
          |||||||  ||||||||||||||||||||||| ||| |||||
Sbjct: 2  acctctatcagttgaagctgccagcatgatcttagccttcct 43



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  atcatgtggcagtttcacctgtt 109
           |||||||||||||||||||||||
Sbjct: 66  atcatgtggcagtttcacctgtt 88




>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
          Length = 102

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 agttgaagctgccagcatgatctgagcttt 41
          ||||||||||||||||||||||| ||||||
Sbjct: 11 agttgaagctgccagcatgatctaagcttt 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  atcatgtggcagtttcacctgtt 109
           |||||||||||||||||||||||
Sbjct: 74  atcatgtggcagtttcacctgtt 96




>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
          (castor bean)
          Length = 89

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tagttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||||
Sbjct: 10 tagttgaagctgccagcatgatctg 34



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  atcatgtggcagtttcacctgtt 109
           |||||||||||||||||||||||
Sbjct: 61  atcatgtggcagtttcacctgtt 83




>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
          trichocarpa
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  ctagtagttgaagctgccagcatgatct 34
          |||| |||||||||||||||||||||||
Sbjct: 6  ctagcagttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
          trichocarpa
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  ctagtagttgaagctgccagcatgatct 34
          |||| |||||||||||||||||||||||
Sbjct: 6  ctagcagttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  ctagtagttgaagctgccagcatgatct 34
          |||| |||||||||||||||||||||||
Sbjct: 6  ctagcagttgaagctgccagcatgatct 33




>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
          bicolor (sorghum)
          Length = 265

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 13 gttgaagctgccagcatgatctga 36
          ||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctga 35




>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
          (sea-island cotton)
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agttgaagctgccagcatgatct 34
          |||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
          trichocarpa
          Length = 435

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
          Length = 436

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
          (castor bean)
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agttgaagctgccagcatgatct 34
          |||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33




>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agttgaagctgccagcatgatct 34
          |||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33




>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
          Length = 154

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agttgaagctgccagcatgatct 34
          |||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  atcatgtggcagtttcacctgtt 109
           |||||||||||||||||||||||
Sbjct: 65  atcatgtggcagtttcacctgtt 87




>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
          Length = 354

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
          Length = 94

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agttgaagctgccagcatgatct 34
          |||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33




>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
          (sorghum)
          Length = 165

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 tgaagctgccagcatgatctgag 37
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgag 36




>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
          (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gttgaagctgccagcatgatctg 35
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
          Indica Group
          Length = 129

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 15 tgaagctgccagcatgatctgagcttt 41
          |||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctgatcttt 40




>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
          (castor bean)
          Length = 343

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ttgaagctgccagcatgatctg 35
          ||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
          Length = 116

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ttgaagctgccagcatgatctg 35
          ||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
          (sorghum)
          Length = 109

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
          bicolor (sorghum)
          Length = 113

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
          (sorghum)
          Length = 165

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
          Japonica Group
          Length = 115

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
          (African rice)
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
          Length = 118

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
          Group
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgaagctgccagcatgatctga 36
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35