miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 83/95 (87%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaactttcttctcgattaatcaaggaa 78
||||| ||||||||||||||||||||||||||||||||||| | || | | |||||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctaaactttcct-tccact-ctcaaggat 58
Query: 79 agatcggatcatatggcagcttcacctgttgatgg 113
||||||||||| ||| ||||||||||||| ||||
Sbjct: 59 tgatcggatcatgtggtagcttcacctgttcatgg 93
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 20 accactagcagttgaagctgccagcatgatctaaacttt 58
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 22 cactagcagttgaagctgccagcatgatctaaactttc 59
||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactttc 41
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaa 54
||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaactttcttc 62
|||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaacttgcttc 44
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaactttcttctcgattaatcaaggaa 78
||||| ||||||||||||||||||||||||||| ||||| | || | | ||||||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctcaacttcc--ctatacaagtcaaggaa 58
Query: 79 agatcggatcatatggcagcttcacctgttgatgg 113
||||| |||||| ||| ||| ||||||||||||||
Sbjct: 59 agatcagatcatgtggtagcctcacctgttgatgg 93
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 26 agcagttgaagctgccagcatgatctaaactttcttctc 64
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 agcagttgaagctgccagcatgatctaaacttccttctc 46
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaa 53
|||||||||||||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaactttc 59
||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctgaactttc 41
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaa 54
|||||||| |||||||||||||||||||||||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaa 54
|||||||||||||| |||||||||||||||||||||
Sbjct: 1 caccactagcagttaaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaacttt 58
||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1 caccaatagcagttgaagctgccagcatgatctaagcttt 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 gatcatatggcagcttcacctgttgatgga 114
|||||| |||||| ||||||||||||||||
Sbjct: 73 gatcatgtggcagtttcacctgttgatgga 102
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatctaaactt 57
|||||||| |||||||||||||||||||||||| |||||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaactt 39
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 tagcagttgaagctgccagcatgatct 51
|||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctaaactt 57
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 caccactagcagttgaagctgccagcatgatct 51
|||| ||| ||||||||||||||||||||||||
Sbjct: 1 cacctctatcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 agttgaagctgccagcatgatct 51
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctaa 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 agcagttgaagctgccagcatgatct 51
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctaa 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 agcagttgaagctgccagcatgatct 51
||||| ||||||||||||||||||||
Sbjct: 8 agcaggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctaa 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 agcagttgaagctgccagcatgatct 51
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
