miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
          Length = 105

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 140 tttgtgttctcaggtcacccctttggagcacc 171
           |||||||||||||||||||||||||| |||||
Sbjct: 73  tttgtgttctcaggtcacccctttggggcacc 104




>RF00695;MIR398;AARH01004353.1/90880-90989 3694:Populus trichocarpa
          Length = 110

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 142 tgtgttctcaggtcacccctttggagcaccc 172
           |||||||||||||||||||||||| ||||||
Sbjct: 80  tgtgttctcaggtcacccctttggggcaccc 110




>RF00695;MIR398;AASG02002548.1/28926-28824 3988:Ricinus communis
           (castor bean)
          Length = 103

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 142 tgtgttctcaggtcacccctttggagcaccc 172
           |||||||||||||||||||||||| ||||||
Sbjct: 73  tgtgttctcaggtcacccctttggggcaccc 103




>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya (papaya)
          Length = 103

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 140 tttgtgttctcaggtcacccctttg 164
           |||||||||||||||||||||||||
Sbjct: 71  tttgtgttctcaggtcacccctttg 95




>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana (thale
           cress)
          Length = 105

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 140 tttgtgttctcaggtcacccctttg 164
           |||||||||||||||||||||||||
Sbjct: 73  tttgtgttctcaggtcacccctttg 97




>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
           (barrel medic)
          Length = 108

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 140 tttgtgttctcaggtcacccctttg 164
           |||||||||||||||||||||||||
Sbjct: 76  tttgtgttctcaggtcacccctttg 100




>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
          Length = 111

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 141 ttgtgttctcaggtcacccctttgg 165
           |||||||||||||||||||||||||
Sbjct: 80  ttgtgttctcaggtcacccctttgg 104




>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
          Length = 132

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 141 ttgtgttctcaggtcacccctttg 164
           ||||||||||||||||||||||||
Sbjct: 101 ttgtgttctcaggtcacccctttg 124




>RF00695;MIR398;EU869094.1/300-186 39946:Oryza sativa Indica Group
          Length = 115

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 142 tgtgttctcaggtcacccctttgg 165
           ||||||||||||||||||||||||
Sbjct: 85  tgtgttctcaggtcacccctttgg 108