miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 103 bits (52), Expect = 1e-21
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 23 gagtggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagcta 82
||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| |||||
Sbjct: 8 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 67
Query: 83 tggatcccacag 94
||||||||||||
Sbjct: 68 tggatcccacag 79
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 150 ggagcttcattacctttccacagatccttatttggattgaagggagctctacat 203
|||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 132 ggagcttcattaccttgtattagatccttgtttggattgaagggagctctacat 185
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 93.7 bits (47), Expect = 1e-18
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 23 gagtggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagcta 82
||||||||||||||||||||||| ||||| ||||| ||||| |||| |||||||||||||
Sbjct: 8 gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67
Query: 83 tggatcc 89
|||||||
Sbjct: 68 tggatcc 74
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 171 agatccttatttggattgaagggagctcta 200
|||||| | |||||||||||||||||||||
Sbjct: 145 agatccctttttggattgaagggagctcta 174
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 87.7 bits (44), Expect = 6e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 23 gagtggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagcta 82
||||||||||||||||||||||| |||||||||| ||||| |||||||||||| | ||
Sbjct: 8 gagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactta 67
Query: 83 tggatcccacag 94
||||||||||||
Sbjct: 68 tggatcccacag 79
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 171 agatccttatttggattgaagggagctctaca 202
|||||||| |||||||||||||||||||||||
Sbjct: 153 agatccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 61.9 bits (31), Expect = 4e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 28 gagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatggat 87
|||||||||||||||||| ||||| | ||| |||| ||||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 88 cccacag 94
||||||
Sbjct: 73 tccacag 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 173 atccttatttggattgaagggagctctaca 202
|||||| |||||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 61.9 bits (31), Expect = 4e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 28 gagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatggat 87
|||||||||||||||||| ||| | || || ||||| ||| |||||||| ||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 88 cccacag 94
|||||||
Sbjct: 61 cccacag 67
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gagtggagctccttgaagtccaacaga 49
|||||||||||||||||||||||||||
Sbjct: 8 gagtggagctccttgaagtccaacaga 34
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 180 tttggattgaagggagctctacat 203
||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 180 tttggattgaagggagctctacat 203
||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacat 195
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 agctgctaagctatggatccca 91
||||||||||||||||||||||
Sbjct: 56 agctgctaagctatggatccca 77
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 agctgctaagctatggatccca 91
||||||||||||||||||||||
Sbjct: 56 agctgctaagctatggatccca 77
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 181 ttggattgaagggagctctaca 202
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
