miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 107 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 166
|||||||||||||| |||||| | |||||||| || ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaa 172
Query: 167 gggagctctacacctc 182
||||||||||||||||
Sbjct: 173 gggagctctacacctc 188
Score = 54.0 bits (27), Expect = 7e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 73
|||||||||||||||||||||||| ||| | |||| | || ||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 74 ccc 76
|||
Sbjct: 73 ccc 75
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 73
|||||||||||||||||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 74 ccc 76
|||
Sbjct: 73 ccc 75
Score = 56.0 bits (28), Expect = 2e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 107 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 166
|||||||||||||| |||||| ||||||| | | | | ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaa 172
Query: 167 gggagctctaca 178
||||||||||||
Sbjct: 173 gggagctctaca 184
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 149 atccttttttggattgaagggagctctacacctc 182
|||||| |||||||||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctctacacctc 188
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 gtagagctccttgaagtccaatagaggat 39
|||||||||||||||||||||||||||||
Sbjct: 10 gtagagctccttgaagtccaatagaggat 38
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 58.0 bits (29), Expect = 5e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 33 agaggatctgagtgggaatatcgagctgctggtctatggatccctcaagtcctatct 89
||||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaa-tcctatct 87
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 147 tgatccttttttggattgaagggagctctaca 178
||||| ||||||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctctaca 190
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 157 ttggattgaagggagctctacacctc 182
||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctc 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctcta 176
||||| |||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctcta 174
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagagg 37
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctct 175
|||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaataga 35
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 156 tttggattgaagggagctctaca 178
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
