miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 122 taatttaccttgtgttctcaggtcacccctttgag 156
||||||| |||||||||||||||||||||||||||
Sbjct: 92 taatttatcttgtgttctcaggtcacccctttgag 126
>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttgagccaac 161
|||||||||||||||||||||||||| ||||
Sbjct: 77 ttgtgttctcaggtcacccctttgagtcaac 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tatctcagaggagtgaacctgagaacacaa 33
|||||||||||||||| ||||||||||||
Sbjct: 4 tatctcagaggagtgacactgagaacacaa 33
>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya (papaya)
Length = 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttgag 156
||||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttgag 97
>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana (thale
cress)
Length = 105
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttga 155
|||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttga 98
>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
Length = 111
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 130 cttgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||||
Sbjct: 79 cttgtgttctcaggtcacccctttg 103
>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttg 154
||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttg 97
>RF00695;MIR398;AARH01004353.1/90880-90989 3694:Populus trichocarpa
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttg 102
>RF00695;MIR398;AASG02002548.1/28926-28824 3988:Ricinus communis
(castor bean)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccctttg 95
>RF00695;MIR398;EU869094.1/300-186 39946:Oryza sativa Indica Group
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttg 107
