miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 83.8 bits (42), Expect = 1e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 6 tgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 46.1 bits (23), Expect = 3e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgac 284
||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttccccatcatgac 112
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 83.8 bits (42), Expect = 1e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 6 tgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 83.8 bits (42), Expect = 1e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 6 tgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 81.8 bits (41), Expect = 5e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 7 gagcaagatggagaagcagggcacgtgcattactaactcat 47
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgac 284
||||||||| ||||||||||||||||| ||||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttccccatcatgac 143
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 77.8 bits (39), Expect = 8e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 5 atgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 atgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgac 284
||||||||| ||||||||||||||||| ||||||||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttcaccatcatgac 168
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 77.8 bits (39), Expect = 8e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 5 atgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 atgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgac 284
||||||||| ||||||||||||||||| ||||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatcatgac 167
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 77.8 bits (39), Expect = 8e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 5 atgagcaagatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 atgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgac 284
||||||||| ||||||||||||||||| ||||||||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttcaccatcatgac 166
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 75.8 bits (38), Expect = 3e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 6 tgagcaagatggagaagcagggcacgtgcattactaactcat 47
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 67.9 bits (34), Expect = 8e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 10 caagatggagaagcagggcacgtgcattactaactcat 47
|||||||||||||||||||||||||| |||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcat 43
Score = 50.1 bits (25), Expect = 2e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 246 tgagttagtggttcatgtgcccatcttcgccatcatgacaa 286
||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatcatgacaa 152
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 67.9 bits (34), Expect = 8e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 6 tgagcaagatggagaagcagggcacgtgcattactaactcat 47
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcat 43
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 65.9 bits (33), Expect = 3e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 9 gcaagatggagaagcagggcacgtgcattacta 41
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 63.9 bits (32), Expect = 1e-09
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 244 agtgagttagtggttcatgtgcccatcttcgccatcatgacaac 287
|||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 252 agtgagttagtgcttcatgtgcccctcttccccatcatgacaac 295
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 10 caagatggagaagcagggcacgtgcattactaactcat 47
|||||||||||||||||||||||||| | |||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 9 gcaagatggagaagcagggcacgtgcattact 40
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 13 gatggagaagcagggcacgtgcattactaactcat 47
||||||||||||||||||||||| |||||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 agcaagatggagaagcagggcacgtgcattactaactcatca 49
|||| ||||||||||||||||||||||| | |||||||||||
Sbjct: 4 agcatgatggagaagcagggcacgtgcaatgctaactcatca 45
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 257 ttcatgtgcccatcttcgccatcatgacaac 287
||||||||||| ||||| |||||||||||||
Sbjct: 69 ttcatgtgcccctcttccccatcatgacaac 99
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gatggagaagcagggcacgtgcattac 39
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tggagaagcagggcacgtgcattac 39
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tggagaagcagggcacgtgcattac 39
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 gatggagaagcagggcacgtgca 35
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tggagaagcagggcacgtgcatt 37
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
