miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 25 ttatattatggaacggagggagta 2
>RF01058;MIR806;AP003960.2/91001-90759 39947:Oryza sativa Japonica
Group
Length = 243
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 25 ttatattatggaacggagggagta 2
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggag 77
||||||||||||||||||||||
Sbjct: 219 ttatattatggaacggagggag 240
>RF00906;MIR1122;EU835198.1/120580-120672 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaatat 83
||||||||||| ||||||||||||||||
Sbjct: 66 ttatattatgggacggagggagtaatat 93
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 28 ttatattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02012907.1/4650-4807 39946:Oryza sativa
Indica Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 28 ttatattatggaacggagggagta 5
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 28 ttatattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagta 79
||||||||||||||||||||||||
Sbjct: 109 ttatattatggaacggagggagta 132
>RF00906;MIR1122;AAAA02030479.1/4787-4952 39946:Oryza sativa Indica
Group
Length = 166
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaatat 83
||||||||||| ||||||||||||||||
Sbjct: 139 ttatattatgggacggagggagtaatat 166
>RF00906;MIR1122;AACV01022113.1/70289-70455 39947:Oryza sativa
Japonica Group
Length = 167
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaatat 83
||||||||||| ||||||||||||||||
Sbjct: 140 ttatattatgggacggagggagtaatat 167
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 tatattatggaacggagggagta 79
|||||||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tatattatggaacggagggagta 79
|||||||||||||||||||||||
Sbjct: 132 tatattatggaacggagggagta 154
>RF00906;MIR1122;AAAA02022570.1/2584-2456 39946:Oryza sativa Indica
Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 tattatattatggaacggagggagtaa 80
||||||||||||| |||||||||||||
Sbjct: 100 tattatattatgggacggagggagtaa 126
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 tatattatggaacggagggagta 79
|||||||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02018486.1/27307-27424 39946:Oryza sativa
Indica Group
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagtaata 82
||||||||||| |||||||||||||||
Sbjct: 28 ttatattatgggacggagggagtaata 2
>RF00906;MIR1122;AP004687.2/98890-98773 39947:Oryza sativa Japonica
Group
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaata 82
||||||||||| |||||||||||||||
Sbjct: 91 ttatattatgggacggagggagtaata 117
>RF00906;MIR1122;AP002865.1/97444-97566 39947:Oryza sativa Japonica
Group
Length = 123
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaata 82
||||||||||| |||||||||||||||
Sbjct: 96 ttatattatgggacggagggagtaata 122
>RF00906;MIR1122;AC090120.8/86565-86433 4530:Oryza sativa (rice)
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaata 82
||||||||||| |||||||||||||||
Sbjct: 106 ttatattatgggacggagggagtaata 132
>RF00906;MIR1122;AJ234502.1/104-174 4513:Hordeum vulgare
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58 atattatggaacggagggagtaatat 83
||||||||| ||||||||||||||||
Sbjct: 26 atattatgggacggagggagtaatat 1
>RF00906;MIR1122;CT009625.1/19364-19456 37682:Aegilops tauschii
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaat 81
||||||||||| ||||||||||||||
Sbjct: 66 ttatattatgggacggagggagtaat 91
>RF00906;MIR1122;AAAA02005262.1/2781-2672 39946:Oryza sativa Indica
Group
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaat 81
||||||||||| ||||||||||||||
Sbjct: 83 ttatattatgggacggagggagtaat 108
>RF00906;MIR1122;AAAA02009816.1/6724-6859 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atattatggaacggagggagta 79
||||||||||||||||||||||
Sbjct: 111 atattatggaacggagggagta 132
>RF00906;MIR1122;AP008209.1/30325748-30325904 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttatattatggaacggagggagtaat 81
||||||||||| ||||||||||||||
Sbjct: 130 ttatattatgggacggagggagtaat 155
>RF00906;MIR1122;AAAA02017484.1/6201-6342 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagtaat 81
||||||||||| ||||||||||||||
Sbjct: 28 ttatattatgggacggagggagtaat 3
>RF00906;MIR1122;AP002869.1/81681-81526 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 atattatggaacggagggagta 79
||||||||||||||||||||||
Sbjct: 26 atattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02001357.1/661-786 39946:Oryza sativa Indica
Group
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 atattatggaacggagggagta 79
||||||||||||||||||||||
Sbjct: 26 atattatggaacggagggagta 5
>RF00906;MIR1122;AACV01006359.1/1475-1631 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 54 tattatattatggaacggagggagta 79
||||||||||||| ||||||||||||
Sbjct: 30 tattatattatgggacggagggagta 5
>RF00906;MIR1122;AP008211.1/23389262-23389121 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 56 ttatattatggaacggagggagtaat 81
||||||||||| ||||||||||||||
Sbjct: 28 ttatattatgggacggagggagtaat 3
