miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 75.8 bits (38), Expect = 7e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 atactccctccgtaaagaaatataagagcgtttaggtcacta 45
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 19 gtaaagaaatataagagcgtttagatcact 48
||||| ||||||||||||||| ||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcact 50
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 75.8 bits (38), Expect = 7e-14
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactat 50
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcactat 42
Score = 69.9 bits (35), Expect = 4e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatca 46
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 4 atactccctctgtaaagaaatataagagcgtttagatca 42
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 3e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcacta 49
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 4 atactccctctgtaaactaatataagagcattcagatcacta 45
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 73.8 bits (37), Expect = 3e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 12 tccctccgtaaagaaatataagagcgtttagatcactattt 52
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattt 46
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatc 45
||||||||| ||||| ||||||||| |||||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatc 41
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 4 atactccctctgtaaagaaatataagatcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||| |||||||||||||| | ||||||||||||
Sbjct: 95 tactccctccacaaagaaatataagatcatttagatcacta 55
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
|||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 90 atacaccctctgtaaagaaatataagagcgtttagatcacta 49
Score = 63.9 bits (32), Expect = 2e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcact 48
|||| |||| ||||||||||||||||||||||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcact 44
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcacta 45
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataacta 49
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataacta 49
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||| || |||||||||||||||||||| ||||||||||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcacta 45
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 65.9 bits (33), Expect = 6e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 63.9 bits (32), Expect = 2e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattt 48
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 63.9 bits (32), Expect = 2e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattt 46
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| |||| |||||||||| |||||||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcacta 45
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 2e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattt 46
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcacta 45
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 63.9 bits (32), Expect = 2e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattt 48
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttaga 43
||||||||||||||| ||||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttaga 55
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 7 aatactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 aatactccctctgtaaactaatataagagcgtttagatcacta 45
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttagatcacta 49
||||||||||||||||||||||||
Sbjct: 72 aatataagagcgtttagatcacta 49
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 14 cctccgtaaagaaatataagagcgtttagatcactattt 52
|||||||||| |||||||||||||||||||||||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattt 46
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||||||| ||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcacta 45
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 16 tccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||||||| ||||||||||||||
Sbjct: 12 tccgtaaagaaatataagaacgtttagatcacta 45
Score = 60.0 bits (30), Expect = 4e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 93 atactccatccgtaaagaaatacaagagcgtctagatcacta 52
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 60.0 bits (30), Expect = 4e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 4 atactccctccgtaaattaatataagagcgtttagattacta 45
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 tataagagcgtttagatcacta 49
||||||||||||||||||||||
Sbjct: 70 tataagagcgtttagatcacta 49
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcacta 45
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 7 aatactccctccgtaaagaaatataagagcgtttagatcactattt 52
|||||| |||| ||||| ||||||||||| |||||||||||||||
Sbjct: 91 aatacttcctctgtaaactaatataagagcatttagatcactattt 46
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcacta 47
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||| |||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtacagaaatataagaatgtttagatcacta 45
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| |||||||||||||||| | ||||||| ||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataacta 49
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattt 48
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||| ||||| ||||||||||||||||||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcacta 49
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattt 46
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttaga 43
||||||||||||||| ||||||| ||||||||||
Sbjct: 5 tactccctccgtaaactaatataaaagcgtttaga 39
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 11 ctccctccgtaaagaaatataagagcgtttagatcactat 50
||||||| |||||||||||||||| | |||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcactat 37
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 atactccctccgtaaagaaatataagagcgttta 41
|||||||||| |||||||||||||||| ||||||
Sbjct: 4 atactccctctgtaaagaaatataagatcgttta 37
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 aatactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||| ||||| |||||||||||| |||||||||||
Sbjct: 3 aatactccctctgtaaactaatataagagcgcttagatcacta 45
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| |||||||||||| |||||||||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcacta 49
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 aatactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||| || || |||||| ||||||||||||||||||
Sbjct: 3 aatactccctctgtgaataaatatgagagcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||| ||||| ||||||||||||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 10 actccctccgtaaagaaatataagagcgtttagatcactattt 52
|||||||||||||| |||||||||| ||||||||||| ||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattt 46
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagcgtttagatcacta 49
||||| |||||||||||||||||||||||||
Sbjct: 15 gtaaacaaatataagagcgtttagatcacta 45
Score = 52.0 bits (26), Expect = 9e-07
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||| ||||| ||||||||||||||| || ||||||||||
Sbjct: 90 atactcactccgcaaagaaatataagagtgtctagatcacta 49
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 aatataagagcgtttagatcactattt 52
|||||||||||||||||||||||||||
Sbjct: 67 aatataagagcgtttagatcactattt 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 8 atactccctccgtaaagaaatataagagcgtttagatca 46
|||||||||||||||| ||||||||||| |||||||||
Sbjct: 135 atactccctccgtaaactaatataagagcatttagatca 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttag 42
||||||||| ||||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttaga 43
||||||||||||||| ||||||||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 7 aatactccctccgtaaagaaatataagagcgtttagatcactattt 52
||||||||||| ||||| ||||||| ||| |||||||||||||||
Sbjct: 3 aatactccctctgtaaactaatataaaagcatttagatcactattt 48
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattacta 45
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcacta 45
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttaga 43
|||||||||| |||| ||||||||||||||||||
Sbjct: 96 tactccctccttaaactaatataagagcgtttaga 62
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattacta 45
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 5 ttaatactccctccgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||| |||| ||||||||||| |||||| |||||
Sbjct: 93 ttaatactccctccataaactaatataagagcatttagaacacta 49
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcacta 48
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tccctccgtaaagaaatataagagcgtttaga 43
|||||||||||| ||||||||||||||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttaga 39
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttaga 43
||||||||||||||| ||||||| ||||||||||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga 53
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgt 38
||||||||||||||| |||||||||||||
Sbjct: 62 tactccctccgtaaactaatataagagcgt 33
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 13 ccctccgtaaagaaatataagagcgtttagatcacta 49
||||| ||||| ||||||||||| ||||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||| | ||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcacta 49
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| ||||||||| | ||||||||||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 12 tccctccgtaaagaaatataagagcgtttagatcactattt 52
||||| |||||| ||||||||||| |||||| ||||||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacactattt 46
