miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 178 ttactccctctgtctcataatataagacgttttt 211
||||||||||||||||||||| ||||||||||||
Sbjct: 4 ttactccctctgtctcataatgtaagacgttttt 37
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 58.0 bits (29), Expect = 9e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 179 tactccctctgtctcataatataagacgttttt 211
||||||||||||| |||||||||||||||||||
Sbjct: 87 tactccctctgtcccataatataagacgttttt 55
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 179 tactccctctgtctcataatataaga 204
||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtctcataatataaga 30
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 179 tactccctctgtctcataatataagacgttttt 211
||||||||||||| |||||||||| ||||||||
Sbjct: 89 tactccctctgtcccataatataaaacgttttt 57
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 tactccctctgtctcataatataagacgttttt 211
|||||| |||||| |||||||||||||||||||
Sbjct: 5 tactccttctgtcccataatataagacgttttt 37
>RF00906;MIR1122;AP004348.4/54604-54470 39947:Oryza sativa Japonica
Group
Length = 135
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 179 tactccctctgtctcataatataag 203
|||||||||||||||||||||||||
Sbjct: 5 tactccctctgtctcataatataag 29
>RF00906;MIR1122;AAAA02005262.1/2781-2672 39946:Oryza sativa Indica
Group
Length = 110
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 179 tactccctctgtctcataatataagacg 206
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctctgtcccataatataagacg 32
>RF00906;MIR1122;AC226706.2/62906-62750 63629:Oryza minuta
Length = 157
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 175 tatttactccctctgtctcataatataa 202
|||||||||||||||||||| |||||||
Sbjct: 1 tatttactccctctgtctcaaaatataa 28
>RF00906;MIR1122;AP001859.1/3128-3249 39947:Oryza sativa Japonica
Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 179 tactccctctgtctcataatata 201
|||||||||||||||||||||||
Sbjct: 5 tactccctctgtctcataatata 27
>RF00906;MIR1122;AAAA02005800.1/23183-23322 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 178 ttactccctctgtctcataatataaga 204
|||||||||| ||||||||||||||||
Sbjct: 137 ttactccctccgtctcataatataaga 111
>RF00906;MIR1122;AAAA02018547.1/31962-31829 39946:Oryza sativa
Indica Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 177 tttactccctctgtctcataatataag 203
||||||||||||||| |||||||||||
Sbjct: 3 tttactccctctgtcccataatataag 29
>RF00906;MIR1122;AP008217.1/8435064-8435202 39947:Oryza sativa
Japonica Group
Length = 139
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 297 acattgtgaaatggagggagtat 319
|||||||||||||||||||||||
Sbjct: 26 acattgtgaaatggagggagtat 4
