miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 62 cgtttagatcactactttagtgatctaaacgctcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||||| |||||||||||| | |||||||||| || ||| |||||||||
Sbjct: 32 cgtttagatcactaaagtagtgatctaaacgctcttatattagttcaca-agggagtac 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 89.7 bits (45), Expect = 8e-18
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagaggga 100
||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaaggtcttatattagtttacagaggga 8
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| |||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 34 tttagatcactaaagtagtgatctaaaaggtcttatattagtttacagagggagtac 90
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 49 ttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 35 ttagatcactactttagtgatctaagcgctcttatattagtttacagagggagta 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 49 ttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||| ||||||||||| | |||||||||| |||||||||||||||
Sbjct: 59 ttagatcactaaagtagtgatctaagcgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||| ||||||||||||||||||| | | |||||||| ||||||||||||||||
Sbjct: 33 gtttagattactactttagtgatctaaatgtttttatattagtttacagagggagtac 90
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||| |||| |||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 62 cgtttagattactattttagtgatctaaatgctcttatattagtttacagagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||| |||| ||||||| | |||||||||| ||||| |||||||||
Sbjct: 34 tttagatcactaaaatagtaatctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| ||||
Sbjct: 62 cgtttagatcactacttcagtgatctaaacgctcttatatttctttacagaggtagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagaggg 99
||||||||||||| |||||||||||| | ||||||||| ||||||||||||
Sbjct: 32 cgtttagatcactgaagtagtgatctaaacgctcttatatttctttacagaggg 85
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||||| |||||||||| ||| | |||||||||| |||||||||||||||
Sbjct: 62 cgtttagatcactattttagtgatccaaacgctcttatattaatttacagagggagta 5
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 51 agatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||||||||||||||| | ||||||||| |||||| |||||||||
Sbjct: 37 agatcactactttagtgatctaaatgctcttatatttctttacggagggagta 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||| ||||||||| || | |||||||||| |||||||||||||||
Sbjct: 60 tttagatcactaaagtagtgatctgaatgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 56 actactttagtgatctaaaggatcttatattactttacagagggagta 103
|||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 52 actattttagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||| |||||||||||| ||||||| | |||||||||| |||||||||||||||
Sbjct: 60 tttagaacactactttagtaatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||||| |||| ||||||||| | |||||||||| ||||| |||||||||
Sbjct: 77 cgtttagatcactattttaatgatctaaatgctcttatattagtttacggagggagta 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 78 tcttatattactttacagagggagtac 104
|||||||||| ||||||||||||||||
Sbjct: 30 tcttatattagtttacagagggagtac 4
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||| ||||||||||||||||| | | ||||||||| ||||||||| |||||||
Sbjct: 61 gtttagataactactttagtgatctagacgctcttatatttctttacagaaggagtac 4
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||| ||||||||||||||||||| | ||||||| || |||||||| ||||||
Sbjct: 32 cgtttagattactactttagtgatctaaacgctcttatagtagtttacagacggagta 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||||| |||| ||||||| | |||||||||| ||||| |||||||||
Sbjct: 62 cgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggagggagta 5
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| |||||||| ||||| | |||||||||| ||||| ||||||||||
Sbjct: 60 tttagatcactattttagtgacctaaacgctcttatattagtttacggagggagtac 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||| |||||| |||||||||||| | |||||||||| |||||||||| ||||
Sbjct: 32 cgtttaggtcactaaaatagtgatctaaatgctcttatattagtttacagaggaagta 89
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
||||||| |||||||||||| |||||| | ||||||||| |||||| ||||||||||
Sbjct: 60 tttagataactactttagtgctctaaacgctcttatatttctttaccgagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||| ||||| |||| ||||||| | ||||||||| ||||| |||||||||||
Sbjct: 32 cgtttagagcactaaagtagttatctaaatgctcttatatttctttatagagggagtac 90
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 33 gtttagatcactaaagtagttatctaaatgatcttatatttctttacagagggagta 89
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 38 tataggatcgtttagatcactactttagtgatctaaaggatcttatattactttacagag 97
|||| |||| ||||||| ||||||||||||||||||| ||||||||| || ||| |||
Sbjct: 70 tataagatcatttagataactactttagtgatctaaacattcttatatttctgtacggag 11
Query: 98 ggagtac 104
|||||||
Sbjct: 10 ggagtac 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagt 102
|||| |||||||| |||||||||||||| | |||||||||| ||||| ||||||||
Sbjct: 33 gttttgatcactattttagtgatctaaacgctcttatattagtttactgagggagt 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtacc 105
|||||||||||||| |||||||| ||| |||||||||| ||||| |||||||||||
Sbjct: 62 cgtttagatcactaaaatagtgatcaaaacactcttatattaatttacggagggagtacc 3
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/55 (90%), Gaps = 2/55 (3%)
Strand = Plus / Minus
Query: 48 tttagatcactact--ttagtgatctaaaggatcttatattactttacagaggga 100
|||||||||||||| ||||||||||||| | |||||||||| ||||||||||||
Sbjct: 62 tttagatcactactacttagtgatctaaaaggtcttatattagtttacagaggga 8
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 51 tagtgatctaaaaggtcttatattagtttacagagggagtac 92
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggag 101
|||||||||||| ||||||||||| ||||||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 71 taaaggatcttatattactttacagagggagta 103
|||| ||||||||||| ||||||||||||||||
Sbjct: 37 taaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||||| ||||| |||||||| | |||||||| ||||||||||||||||
Sbjct: 62 cgtttagatcactattttagagatctaaacgcccttatatttgtttacagagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagaggga 100
|||||||||| ||| |||||||||||| | ||||||||| |||||| ||||||
Sbjct: 32 cgtttagatctctaaaatagtgatctaaacgctcttatatttctttactgaggga 86
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtacc 105
||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtacc 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 47 gtttagatcactactttagtgatctaaa 74
||||||||||||||||||||||||||||
Sbjct: 59 gtttagatcactactttagtgatctaaa 32
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 54 tcactactttagtgatctaaaggatcttatattactttacagaggg 99
|||||| |||||||||||||| | |||||||||| |||||||||||
Sbjct: 54 tcactattttagtgatctaaatgctcttatattagtttacagaggg 9
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 tcttatattactttacagagggagtac 104
|||||||||| ||||||||||||||||
Sbjct: 71 tcttatattagtttacagagggagtac 97
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 48 tagtgatctaaatgctcttatattagtttacagagggagtac 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 43 tagtgatctaaacgctcttatatttctttacagagggagtac 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 66 tgatctaaaggatcttatattactttacagagggagta 103
||||||||| | ||||||||| ||||||||||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacagagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagtac 4
Score = 60.0 bits (30), Expect = 7e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||||| |||||| |||||| | |||||||||| ||||| |||||||||
Sbjct: 32 cgtttagatcactattttagtattctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||| |||| |||| |||| | |||||||||| ||||| |||||||||
Sbjct: 33 gtttagatcactattttaatgatttaaatgctcttatattagtttaccgagggagta 89
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtacc 105
|||||||||||||| |||||| |||||| | | |||||||| ||||| |||||||||||
Sbjct: 62 cgtttagatcactattttagtattctaaacgcttttatattagtttacggagggagtacc 3
Query: 106 t 106
|
Sbjct: 2 t 2
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||| | |||||||||| |||||||||||||||
Sbjct: 49 tagtgatctaaacgttcttatattagtttacagagggagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||| ||||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct: 60 tttagaacactattttagtaatctaaatactcttatattagtttacagagggagtac 4
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 56 actactttagtgatctaaaggatcttatattactttacagagggagta 103
|||||| |||||||||||| | |||||||||| |||||| ||||||||
Sbjct: 45 actactctagtgatctaaacgctcttatattattttacatagggagta 92
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagggagtacctt 107
|||||||||||| |||| | ||||||| | |||||||||| |||| |||||||||||||
Sbjct: 34 tttagatcactattttaataatctaaatgctcttatattagtttatggagggagtacctt 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||| | | |||||||| |||||||||||||||
Sbjct: 45 tagtgatctaaatgcttttatattagtttacagagggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 46 cgtttagatcactactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||| ||||| |||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 62 cgtttagaacactattttagtgatctaaacactcttatattggtttatagagggagtac 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||| ||||| |||||| | |||||||||| ||||| |||||||||
Sbjct: 33 gtttagatcactaaaatagtgttctaaacgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 cgtttagatcactactttagtgatcta 72
|||||||||||||||||||||||||||
Sbjct: 32 cgtttagatcactactttagtgatcta 58
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 48 tttagatcactactttagtgatctaaaggatcttatattactttacagagg 98
||||||||||||||| ||||||||||| | | |||||||| ||||||||||
Sbjct: 58 tttagatcactactt-agtgatctaaatgcttttatattagtttacagagg 9
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagta 103
|||||||||||| | |||||||||| ||||| |||||||||
Sbjct: 47 tagtgatctaaatgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 63 tagtgatctaaaggatcttatattactttacagagggagtac 104
|||||||||||| |||||||||| ||||||||||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagtac 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagagggagta 103
||||||||||||| |||||| || |||| | |||||||| |||||||||||||||
Sbjct: 33 gtttagatcactagtttagtaatttaaaaacttttatattagtttacagagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 56 actactttagtgatctaaaggatcttatattactttacagagggagtac 104
|||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct: 52 actattttagttatctaaacactcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 47 gtttagatcactactttagtgatctaaaggatcttatattactttacagaggga 100
||||||||||| | |||| |||||| || | |||||||||| |||||| |||||
Sbjct: 61 gtttagatcacaattttaatgatctcaacgctcttatattagtttacaaaggga 8
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 78 tcttatattactttacagagggagta 103
|||||||||| |||||||||||||||
Sbjct: 30 tcttatattagtttacagagggagta 5
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 78 tcttatattactttacagagggagta 103
|||||||||| |||||||||||||||
Sbjct: 30 tcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 tcttatattactttacagagggagtacctt 107
|||||||||| ||||| |||||||||||||
Sbjct: 49 tcttatattagtttaccgagggagtacctt 78
