miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 63.9 bits (32), Expect = 6e-10
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 37 ctctgtaaacaaatataacaagttttaggtcactactttaatgacctaaaacgtcctata 96
|||||||||| ||||||| | |||||| ||||||||||| ||| |||||| ||| ||||
Sbjct: 83 ctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtcttata 24
Query: 97 tttatttacagaggga 112
|| ||||||||||||
Sbjct: 23 ttagtttacagaggga 8
Score = 50.1 bits (25), Expect = 8e-06
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 37 ctctgtaaacaaatataacaagttttaggtcactactttaatgacctaaaacgtcctata 96
|||||||||| ||||||| | |||||| |||||| || ||| |||||| ||| ||||
Sbjct: 11 ctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtcttata 70
Query: 97 tttatttacagagggagtaca 117
|| |||||||||||||||||
Sbjct: 71 ttagtttacagagggagtaca 91
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 60 tttaggtcactactttaatgacctaaaacgtcctatatttatttacagagggagtac 116
||||| ||||||||||| ||| |||||| || |||||| ||||||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 65/78 (83%), Gaps = 2/78 (2%)
Strand = Plus / Minus
Query: 37 ctctgtaaacaaatataacaagttttaggtcactact--ttaatgacctaaaacgtccta 94
|||||||||| ||||||| | |||||| |||||||| ||| ||| |||||| ||| ||
Sbjct: 85 ctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaaggtctta 26
Query: 95 tatttatttacagaggga 112
|||| ||||||||||||
Sbjct: 25 tattagtttacagaggga 8
