miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ436986.1/65183-65072 37682:Aegilops tauschii
Length = 112
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 30 gtgtcaaaaaacgtcttacattttgagacagagggagtag 69
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 43 gtgtcaaaaaatgtcttacattttgagacagagggagtag 4
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 29 agtgtcaaaaaacgtcttacattttgagacagagggag 66
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 69 agtgtcaaaaaatgtcttacattttgagatagagggag 106
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 27 atagtgtcaaaaaacgtcttacattttgagacagagggagtag 69
||||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 46 atagtgtcaaaaaacgtcttatattatgggacagagggagtag 88
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 35 aaaaaacgtcttacattttgagacagagggagta 68
||||||||||||||||| ||||||||||||||||
Sbjct: 38 aaaaaacgtcttacattatgagacagagggagta 5
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 28 tagtgtcaaaaaacgtcttacattttgagacagagggagta 68
|||||||||||||||||||||||| || ||| |||||||||
Sbjct: 49 tagtgtcaaaaaacgtcttacattatgggacggagggagta 89
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 27 atagtgtcaaaaaacgtcttacattttgagacagagggagtag 69
||||||||||||||||||||| ||| || |||||| |||||||
Sbjct: 46 atagtgtcaaaaaacgtcttatattatgggacagaaggagtag 4
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 28 tagtgtcaaaaaacgtcttacattttgagacagagggagtag 69
||||||||||||||||| |||||| || ||| ||||||||||
Sbjct: 67 tagtgtcaaaaaacgtcctacattatgggacggagggagtag 108
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 32 gtcaaaaaacgtcttacattttgagacagagggagta 68
|||||||||||||||||||| || ||| |||||||||
Sbjct: 41 gtcaaaaaacgtcttacattatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 tagtgtcaaaaaacgtcttaca 49
||||||||||||||||||||||
Sbjct: 63 tagtgtcaaaaaacgtcttaca 42
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 28 tagtgtcaaaaaacgtcttacattttgagacagagggagta 68
||||||||||||||||| |||||| || ||| |||||||||
Sbjct: 45 tagtgtcaaaaaacgtcctacattatgggactgagggagta 5
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 28 tagtgtcaaaaaacgtcttacattttgagacagagggagta 68
|||||||||||| ||||||||||| || ||| |||||||||
Sbjct: 45 tagtgtcaaaaagcgtcttacattatgggacggagggagta 5
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 28 tagtgtcaaaaaacgtcttacatt 51
||||||||||||||||||||||||
Sbjct: 45 tagtgtcaaaaaacgtcttacatt 22
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 tagtgtcaaaaaacgtcttacatt 51
||||||||||||||||||||||||
Sbjct: 56 tagtgtcaaaaaacgtcttacatt 79
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 tagtgtcaaaaaacgtcttacatt 51
||||||||||||||||||||||||
Sbjct: 27 tagtgtcaaaaaacgtcttacatt 50
>RF00906;MIR1122;EF115142.1/468-377 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 27 atagtgtcaaaaaacgtcttacattttgagacagagggagta 68
||||||||||||||||||||| ||| || || |||||||||
Sbjct: 47 atagtgtcaaaaaacgtcttatattatgttacggagggagta 88
