miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 21 tactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||| |||||||||| |||||||||||
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaat 77
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 21 tactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||||||||| ||||||||| ||||||
Sbjct: 121 tactccctccgtcccaaaatacttgtcgtagaaat 87
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 21 tactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||||||||| ||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaatacttgtcgtagaaat 39
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 19 tctactccctccgtcccaaattacttgtc 47
|||||||||||||| ||||||||||||||
Sbjct: 133 tctactccctccgttccaaattacttgtc 105
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 19 tctactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||||| |||||||||| ||||| |||||
Sbjct: 112 tctactccctccgttccaaattactcgtcgctgaaat 76
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 66 tgcgacaagtaattcgggacggatggagtaca 97
||||||||||||||||| ||||| ||||||||
Sbjct: 114 tgcgacaagtaattcggaacggagggagtaca 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtcccaaattacttgtcgcag 51
|||||||||||| || |||||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcag 113
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 20 ctactccctccgtcccaaattacttgtc 47
||||||||||||| ||||||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtc 105
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 21 tactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||||| || ||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaat 39
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 66 tgcgacaagtaattcgggacggatggagtac 96
||||||||||||||||| ||||| |||||||
Sbjct: 82 tgcgacaagtaattcggaacggagggagtac 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtcccaaattacttgtcgca 50
|||||||||||| || ||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgca 82
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 21 tactccctccgtcccaaattacttgtcgcagaaat 55
|||||||||||||| |||||| |||||| ||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaat 39
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 66 tgcgacaagtaattcgggacggatggagta 95
||||||||||||||| ||||||| ||||||
Sbjct: 34 tgcgacaagtaattccggacggacggagta 5
>RF00906;MIR1122;AL606686.3/85873-85713 39947:Oryza sativa Japonica
Group
Length = 161
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 161 tatctactccctccgtcccaaa 140
>RF00906;MIR1122;AAAA02035134.1/58354-58198 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 157 tatctactccctccgtcccaaa 136
>RF00906;MIR1122;AP008216.1/15579713-15579809 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 1 tatctactccctccgtcccaaa 22
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 105 tatctactccctccgtcccaaa 84
>RF00906;MIR1122;AAAA02000569.1/43583-43659 39946:Oryza sativa
Indica Group
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 1 tatctactccctccgtcccaaa 22
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 105 tatctactccctccgtcccaaa 84
>RF00906;MIR1122;AP003866.3/59767-59922 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tatctactccctccgtcccaaa 38
||||||||||||||||||||||
Sbjct: 156 tatctactccctccgtcccaaa 135
