miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 21 agtactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
||||||||||| |||||||| ||||| |||| |||||||||||||||||
Sbjct: 3 agtactccctctgtcccgaaatacttgtcgcggaaatggatgtatctag 51
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 76 ctagatacatccatctgagcgacaagtattttgagacggagggagta 122
|||||||||||||| | ||||||||||||| | ||| |||||||||
Sbjct: 51 ctagatacatccatttccgcgacaagtatttcgggacagagggagta 5
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 110 tactccctccgttccaaattactcgtcgctgaaatggatgtatctag 64
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 70 ttagtgctagatacatccatctgagcgacaagtattttgagacggagggagtagaa 125
||||| |||||||||||||| | |||||| |||| |||| |||||||||||||||
Sbjct: 58 ttagttctagatacatccatttcagcgacgagtaatttggaacggagggagtagaa 113
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 21 agtactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||||| | ||||||||| || | |||||||||||||||||
Sbjct: 113 agtactccctccgttcggaattacttgtctcagaaatggatgtatctag 65
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 90/111 (81%), Gaps = 7/111 (6%)
Strand = Plus / Minus
Query: 20 tagtactccctccgtcccgaattacttatcgctgaaatggatgtatctag-------tta 72
||||||||||||||| ||||||||||| |||| |||||||||||||| |||
Sbjct: 114 tagtactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtatttta 55
Query: 73 gtgctagatacatccatctgagcgacaagtattttgagacggagggagtag 123
|| |||||||||||||| | |||||| |||| |||| |||| | |||||||
Sbjct: 54 gttctagatacatccatttcagcgacgagtaatttgggacgaaaggagtag 4
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||| | |||||| ||||||| ||||||||||||||||||||||
Sbjct: 5 tactcctttcgtcccaaattactcgtcgctgaaatggatgtatctag 51
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 22 gtactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
||||||||||||| ||||||||||| || | ||||||||||||||||
Sbjct: 4 gtactccctccgttccgaattacttgtctcaaaaatggatgtatctag 51
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||| | ||||||||| ||| ||||||||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctag 65
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 22 gtactccctccgtcccgaattacttatcgctgaaatggatgtatcta 68
||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct: 112 gtactccctccgttccaaattactcgtcgcagaaatggatgtatcta 66
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||| | |||||||| |||| |||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctag 51
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||| | ||||||||| |||| ||||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctag 65
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 20 tagtactccctccgtcccgaattacttatcgctgaaatggat 61
||||||||||||||||| ||| ||||| |||| |||||||||
Sbjct: 2 tagtactccctccgtccggaaatacttgtcgcagaaatggat 43
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 gtactccctccgtcccgaattacttatcgctgaaatggatgtatct 67
||||||||||||| ||||||||||| |||| | ||||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 20 tagtactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
||||||||||||||||| ||| ||||| ||| | |||||||||||||||
Sbjct: 2 tagtactccctccgtccggaaatacttgtcgggggaatggatgtatctag 51
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 cgacaagtattttgagacggagggagta 122
|||||||||||||| |||||||||||||
Sbjct: 94 cgacaagtattttgggacggagggagta 121
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 26 tccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
||||||||| | ||||||||| ||| |||||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctag 51
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 30 tccgtcccgaattacttatcgctgaaatggatgtatctag 69
||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctag 65
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 gaattacttatcgctgaaatggatgtatctag 69
||||||||| |||| |||||||||||||||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctag 59
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 95 cgacaagtattttgagacggagggagta 122
|||||||||||||| |||||||||||||
Sbjct: 32 cgacaagtattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||||| ||| ||||| ||| | |||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctag 75
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 96 gacaagtattttgagacggagggagtag 123
|||||||||||| |||||||||||||||
Sbjct: 31 gacaagtatttttagacggagggagtag 4
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 96 gacaagtattttgagacggagggagta 122
|||||| ||||||||||||||||||||
Sbjct: 31 gacaagaattttgagacggagggagta 5
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 21 agtactccctccgtcccgaattacttatcgctgaaatggatgtatctagtt 71
|||||||||||||| ||||||| | |||| ||||| |||||||||||||
Sbjct: 3 agtactccctccgtttcgaattattcgtcgcagaaatagatgtatctagtt 53
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 agttagtgctagatacatccatctgag 94
|||||||||||||||||||||| ||||
Sbjct: 53 agttagtgctagatacatccatttgag 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 73 gtgctagatacatccatctgagcgacaagtattttgagacggagggagta 122
||||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct: 50 gtgctagatacatccattggagggacaagctttttcggacggagggagta 1
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 19 atagtactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||| |||||| |||| ||||||||| ||| ||||||||||||||||
Sbjct: 117 atagtattccctctgtccggaattacttgccgcaaaaatggatgtatctag 67
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 gacaagtattttgagacggagggagta 122
||||| |||||||||||||||||||||
Sbjct: 74 gacaattattttgagacggagggagta 100
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||||| |||||| || || |||||||||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctag 75
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 23 tactccctccgtcccgaattacttatcgctgaaatggatgtatctag 69
|||||||||||||| ||||| || ||| |||||||||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctag 51
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtaga 124
|||||||||||||||||||||||
Sbjct: 116 tattttgagacggagggagtaga 138
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 25 tattttgagacggagggagtag 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 57 tattttgagacggagggagtag 78
>RF00906;MIR1122;AM932682.1/92777-92652 4565:Triticum aestivum
(bread wheat)
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 68 agttagtgctagatacatccatctgagcgacaag 101
||||||||||| |||||||||| |||| ||||||
Sbjct: 57 agttagtgctaaatacatccatttgagagacaag 90
>RF00906;MIR1122;EU660894.1/7285-7161 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 agttagtgctagatacatccat 89
||||||||||||||||||||||
Sbjct: 56 agttagtgctagatacatccat 77
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 81 tattttgagacggagggagtag 102
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 25 tattttgagacggagggagtag 4
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 28 cctccgtcccgaattacttatcgctgaaatggat 61
||||||||| |||||||||||||| ||||||||
Sbjct: 10 cctccgtccggaattacttatcgcaaaaatggat 43
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 96 gacaagtattttgagacggagggagtagaa 125
||||| ||||||| ||||||||||||||||
Sbjct: 75 gacaattattttgggacggagggagtagaa 104
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 81 tattttgagacggagggagtag 102
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 110 tattttgagacggagggagtag 131
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tattttgagacggagggagtag 123
||||||||||||||||||||||
Sbjct: 112 tattttgagacggagggagtag 133
