miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 93.7 bits (47), Expect = 4e-19
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 20 cctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatcta 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagattta 50
|||||||| ||| ||||||||||||| |||||||||
Sbjct: 5 tactcccttcgtcccaaaaagcttgttttagattta 40
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 12 atatactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 2 atatactacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatcta 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagattta 50
|||||||||||| ||||||| ||||| |||||||||
Sbjct: 100 tactccctccgtcccaaaaaacttgttttagattta 65
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 13 tatactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 133 tatacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatcta 76
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatc 68
|||||||||||| |||||| |||||||||||||| |||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatcta 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatc 68
||||||| || || |||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 4 atactccttctgtcccaaaattcttgtcttagatttttctaaatagggatgtatc 58
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctag 71
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctag 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctag 71
||||||||||||||| || |||||||||||||| |||||||||||| |||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctag 61
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 13 tatactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||
Sbjct: 3 tatactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagt 62
Query: 73 t 73
|
Sbjct: 63 t 63
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium
piliferum
Length = 135
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
||||||||||||| |||||| |||||| ||||||| |||| |||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagt 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagata 58
||||||||||||| |||||| || ||||||||||| | ||||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttgtttagata 88
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatc 68
||||||||| || |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatc 58
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||||| || ||||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatcta 76
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 9e-11
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 13 tatactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
|||||| |||||||||||||| |||||||||||||| | |||||| | |||||||||||
Sbjct: 134 tatactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagt 75
Query: 73 t 73
|
Sbjct: 74 t 74
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacgga 62
|||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 27 tccaaaaagcttgtcttagatttatctagatacggatgt 65
||||||| ||||||||||||||||||||||||||||||
Sbjct: 16 tccaaaattcttgtcttagatttatctagatacggatgt 54
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
|||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatcta 76
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 19 ccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagtt 73
|||||||| |||||| ||||||||| |||| |||| ||||||||||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagtt 73
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
|||||||||||| |||||| ||||||||| |||| |||||||| | |||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagt 62
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtat 67
|||||||||| | |||||| |||||||||||||| |||| ||||||||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtat 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatac 59
||||||||||||| ||||| ||||||||| |||| |||||||||
Sbjct: 4 atactccctccgtctcaaaattcttgtcttacatttgtctagatac 49
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctag 71
|||||||||||||| || ||||||||| |||| |||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctag 61
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatac 59
|||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatac 87
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
|||||||||||| |||||| ||||| ||| ||| ||||||||||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatcta 76
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
||||||||||||| ||||| |||||||||||||| |||||||| | |||||| ||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagt 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 13 tatactccctccgttccaaaaagcttgtcttagatttatcta 54
|||||||||||||| |||||| |||||||||| ||| ||||
Sbjct: 140 tatactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctag 71
||||||||| |||||||||| |||||||||||||| ||| |||| |||||||||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtcttgata-agatgtatctag 60
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
|||||||||||| |||||| ||||||||||||| | |||||| | |||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagt 62
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 5e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 18 tccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||| | |||||| ||||||||| |||| | ||||||||||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatcta 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagtt 73
|||||||||||| |||||| |||||||| |||| |||| ||| |||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtt 63
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
|||||||||||||||||||| |||||||||| || |||| | | |||||||||||
Sbjct: 133 atactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatcta 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
|||||| ||||| |||||| ||||||||| |||| |||| ||| | |||||||||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctagt 62
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagata 58
||||||||||||| | |||| |||||||||||||| ||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagatttgtctagata 48
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatcta 70
||||||||||| |||||||| |||||||||| ||| |||||| |||||||||||
Sbjct: 132 atactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatcta 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 15 tactccctccgttccaaaaagcttgtcttagatttatctagatacggatgtatctagt 72
|||||||||||| ||||| |||| |||| |||| | |||||||| |||||||||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagt 62
>RF00906;MIR1122;ABXC01000529.1/263619-263734 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 atatactccctccgttccaaaaa 34
|||||||||||||||||||||||
Sbjct: 2 atatactccctccgttccaaaaa 24
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 36 cttgtcttagatttatctagatacggatgtatcta 70
|||||||||||||| |||||||| | |||||||||
Sbjct: 26 cttgtcttagatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 14 atactccctccgttccaaaaagcttgtcttagatttatctagatacggatg 64
||||||||||||| |||||| |||||||||||| | | |||||| |||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagatgtttttagatatggatg 83
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atatactccctccgttccaaaa 33
||||||||||||||||||||||
Sbjct: 121 atatactccctccgttccaaaa 100
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 atttatctagatacggatgtatctag 71
||||||||||| ||||||||||||||
Sbjct: 100 atttatctagacacggatgtatctag 75
