miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| ||||| ||| | |||||||||| |||||||||||| |||| |||||||| |
Sbjct: 89 tactccctccatcctataatgtaagacactttttgacactagtgtagtatcaaaaaacct 30
Query: 75 cttacattttgggacggatgaagtacttg 103
|||||||| ||||||||| | ||||||||
Sbjct: 29 cttacattatgggacggagggagtacttg 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| ||||||||||| ||||||||| ||||||| |||| |||||||||||| | |
Sbjct: 5 tactccctccgtcccataatgtaagaggttttttgatactacactagtgtcaaaaagtgt 64
Query: 75 cttacatt 82
||||||||
Sbjct: 65 cttacatt 72
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 34 tgtaagaccatttttgacactatcatagtgtcaaaaaatatcttacattttgggac 89
|||||||| ||||||||||| |||||||||||||||| ||||| ||| ||||||
Sbjct: 22 tgtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggac 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| |||| |||||| ||| |||||| ||||||||||||| | |||||||||||| |
Sbjct: 87 tactccctctgtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgt 28
Query: 75 cttaca 80
||||||
Sbjct: 27 cttaca 22
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 34 tgtaagaccatttttgacactatcatagtgtcaaaaaatatcttacattttgggac 89
|||||||| ||||||||||| |||||||||||||||| ||||| ||| ||||||
Sbjct: 70 tgtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggac 15
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 25 gtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatatcttaca 80
|||||| ||| |||||| ||||||||||||| | |||||||||||| |||||||
Sbjct: 15 gtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgtcttaca 70
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaatgtaagac-catttttgacactatcatagtgtcaaaaaata 73
|||||||||||||||| |||||||||| |||||||||||| || ||| |||| |
Sbjct: 5 tacttcctccgtcccataatgtaagacgtttttttgacactacactaatgttaaaagacg 64
Query: 74 tcttacattttgggacgga 92
|||||||||||||||||||
Sbjct: 65 tcttacattttgggacgga 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 22 tccgtcccaaaatgtaagaccatttttgacactatcatagtgtc-aaaaaatatcttaca 80
|||||||||||||||||||| |||| ||| || ||||||| |||||| |||||||
Sbjct: 83 tccgtcccaaaatgtaagacgtcttttaacattagtgtagtgtcaaaaaaacgtcttaca 24
Query: 81 ttttgggacggatgaagta 99
|| ||||||||| ||||||
Sbjct: 23 ttatgggacggaggaagta 5
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/77 (84%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagac--catttttgacactatcatagtgtcaaaaaat 72
|||||||||||||||| |||||||||| ||||| ||||||| ||||||||||| |
Sbjct: 91 tacttcctccgtcccataatgtaagacgtttttttttacactatactagtgtcaaaagac 32
Query: 73 atcttacattttgggac 89
||| |||||| ||||||
Sbjct: 31 atcctacattatgggac 15
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/57 (85%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 45 ttttgacactatcatagtgtcaaaaaata--tcttacattttgggacggatgaagta 99
||||||||||| ||||||| |||||| | ||||||||| ||||||||| ||||||
Sbjct: 35 ttttgacactagtatagtgtaaaaaaaaacgtcttacattatgggacggaggaagta 91
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| ||||||||||| |||||||||| |||||||||||| | |||||||||| ||
Sbjct: 89 tactccctccgtcccataatgtaagacgttttttgacactacgcttatgtcaaaaaacat 30
Query: 75 cttacattttgggacgga 92
| || ||| |||||||||
Sbjct: 29 cctatattatgggacgga 12
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 59 tagtgtcaaaaaatatcttacattttgggacgga 92
||||||||||||| ||||||||| |||||||||
Sbjct: 49 tagtgtcaaaaaacgtcttacattatgggacgga 82
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| ||||||||||| |||||| ||| |||||||||||| ||||||||||||| |
Sbjct: 107 tactccctccgtcccataatgtaggacgttttttgacactacactagtgtcaaaaaacgt 48
Query: 75 cttaca 80
||||||
Sbjct: 47 cttaca 42
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 11 gaaatacttcctccgtcccaaaatgtaagaccatttttgac 51
|||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 1 gaaatactccctccgtcccataatgtaagacgttttttgac 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 34 tgtaagaccatttttgacactatcatagtgtcaaaaaatatcttacattttgggacgga 92
|||||||| |||||||||||| ||||||||||||| || |||||| |||||||||
Sbjct: 42 tgtaagacgttttttgacactagtgtagtgtcaaaaaacgtcctacattatgggacgga 100
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaatgtaagaccatttttgacacta 55
||||| ||||||||||| |||||||||| ||||||||||||
Sbjct: 4 atactccctccgtcccataatgtaagacgctttttgacacta 45
>RF00906;MIR1122;FJ436986.1/65183-65072 37682:Aegilops tauschii
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 33 atgtaagaccatttttgacactatcatagtgtcaaaaaatatcttacattttg 85
||||||||| ||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 44 atgtaagacgttttttgacattatca--gtgtcaaaaaatgtcttacattttg 94
>RF00906;MIR1122;EU835198.1/120580-120672 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacacta 55
|||| ||||||||||| ||| ||||| ||||||||||||||
Sbjct: 89 tactccctccgtcccataatataagaacatttttgacacta 49
>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 14 atacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaa 70
||||| ||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 89 atactccctccgtcccaaaatataagaaca-ttttgacactagtgtagtgtcaaaaa 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| |||| |||| ||||| ||||| | |||||||||||| ||||||||||| | |
Sbjct: 5 tactacctctgtccaaaaatataagaacgtttttgacactacactagtgtcaaaatgt-t 63
Query: 75 cttacattttgggacgga 92
|||| |||||||||||||
Sbjct: 64 cttatattttgggacgga 81
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 19 tcctccgtcccaaaatgtaagaccatttttgacacta 55
|||||||||||| |||||||||| ||||||||||||
Sbjct: 92 tcctccgtcccataatgtaagacgttttttgacacta 56
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaatgtaagaccatttttgacacta 55
||||| ||| ||||||| |||||||||| ||||||||||||
Sbjct: 4 atactaccttcgtcccataatgtaagacgttttttgacacta 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 59 tagtgtcaaaaaatatcttacattttgggacgga 92
||||||||||||| ||||||||| |||||||||
Sbjct: 56 tagtgtcaaaaaacgtcttacattatgggacgga 89
>RF00906;MIR1122;EU200767.1/2385-2293 37682:Aegilops tauschii
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 11 gaaatacttcctccgtcccaaaatgtaagaccatttt 47
|||||||| ||||||||||| ||| ||||||||||||
Sbjct: 93 gaaatactccctccgtcccataatataagaccatttt 57
>RF00906;MIR1122;AAAA02005583.1/44128-44034 39946:Oryza sativa
Indica Group
Length = 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 gaaatacttcctccgtcccaaaatgtaag 39
|||||||||||||||||||||||| ||||
Sbjct: 1 gaaatacttcctccgtcccaaaatataag 29
>RF00906;MIR1122;AF325196.1/34233-34141 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaa 70
|||| ||||||||||||||| ||||| | ||||| ||| || |||| |||||||||
Sbjct: 89 tactccctccgtcccaaaatataagaacgtttttaacattagcatattgtcaaaaa 34
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaa 70
|||| ||||||||||| ||| ||||| ||||||||||| || ||||||||||||
Sbjct: 89 tactccctccgtcccataatataagagcatttttgacattagtgtagtgtcaaaaa 34
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 20 cctccgtcccaaaatgtaagaccatttttgacacta 55
||||||||||| |||||||||| ||||||||||||
Sbjct: 62 cctccgtcccataatgtaagacgttttttgacacta 27
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 59 tagtgtcaaaaaatatcttacattttgggacgga 92
||||||||||||| ||||||||| |||||||||
Sbjct: 27 tagtgtcaaaaaacgtcttacattatgggacgga 60
>RF00906;MIR1122;AACV01003201.1/17510-17416 39947:Oryza sativa
Japonica Group
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 aaatacttcctccgtcccaaaatgtaag 39
||||||| ||||||||||||||||||||
Sbjct: 94 aaatactacctccgtcccaaaatgtaag 67
>RF00906;MIR1122;AAAA02028032.1/2328-2217 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gaaatacttcctccgtcccaaaatgtaa 38
|||||||| |||||||||||||||||||
Sbjct: 1 gaaatactacctccgtcccaaaatgtaa 28
>RF01058;MIR806;AP008214.1/4785602-4785358 39947:Oryza sativa
Japonica Group
Length = 245
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaatgt 36
|||||||||||||||||||||||
Sbjct: 1 atacttcctccgtcccaaaatgt 23
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaatgtaag 39
|||||| ||||||||||||||||||||
Sbjct: 135 aatactccctccgtcccaaaatgtaag 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaatgtaag 39
||||| ||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaatgtaag 29
>RF00906;MIR1122;AACV01014487.1/12034-11914 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgta 37
|||||||||||||||||||||||
Sbjct: 117 tacttcctccgtcccaaaatgta 95
>RF00906;MIR1122;AAAA02000503.1/4662-4543 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaatgta 37
|||||||||||||||||||||||
Sbjct: 5 tacttcctccgtcccaaaatgta 27
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aatacttcctccgtcccaaaatgtaag 39
|||||| ||||||||||||||||||||
Sbjct: 3 aatactccctccgtcccaaaatgtaag 29
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 aaatacttcctccgtcccaaaatgtaa 38
||||||| |||||||||||||||||||
Sbjct: 2 aaatactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaagaccatttttgacactatcatagtgtcaaaaaatat 74
|||| ||||||||||| ||| ||||| | ||||||||||| |||||||||||| |
Sbjct: 89 tactccctccgtcccataatataagagcgtttttgacactgcactagtgtcaaaaacgct 30
Query: 75 cttacattttgggacgga 92
|||| ||| |||||||||
Sbjct: 29 cttatattatgggacgga 12
>RF00906;MIR1122;AAAA02001792.1/20100-20254 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaatgtaaga 40
|||||||||||||||||||| |||||
Sbjct: 151 tacttcctccgtcccaaaatataaga 126
>RF00906;MIR1122;AC126221.2/108213-108069 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaatgtaag 39
||||| ||||||||||||||||||||
Sbjct: 4 atactacctccgtcccaaaatgtaag 29
>RF00906;MIR1122;AP008216.1/2906565-2906717 39947:Oryza sativa
Japonica Group
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaat 34
||||||||||||||||||||||
Sbjct: 151 aatacttcctccgtcccaaaat 130
