miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtgttt 43
|||||||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacccatggcgttt 32
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtgttt 43
|||||||||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgttt 32
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 ctatgcgtgctcactgctctatctgtca 99
||||| ||||||||||||||||||||||
Sbjct: 61 ctatgtgtgctcactgctctatctgtca 88
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 70 agctatgcgtgctcactgctctatctgtca 99
||||||||||||||||| ||||||||||||
Sbjct: 58 agctatgcgtgctcacttctctatctgtca 87
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtg 40
|||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtg 40
|||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtg 40
|||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AP009602.1/5236-5150 4081:Solanum lycopersicum
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 ctatgcgtgctcactgctctatct 95
||||||||||||||||||||||||
Sbjct: 59 ctatgcgtgctcactgctctatct 82
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 gcgtgctcactgctctatctgtca 99
||||||||||||||||||||||||
Sbjct: 63 gcgtgctcactgctctatctgtca 86
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtg 40
|||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggtg 40
|||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggt 39
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggt 39
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggt 39
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 agaagagagtgagcacccatggtgttt 43
|||||||||||||||| ||||||||||
Sbjct: 6 agaagagagtgagcacacatggtgttt 32
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagcacccatggt 39
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana (thale
cress)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgcgtgctcactgctctatctgtcag 100
||||||||||||||||| ||||||||
Sbjct: 59 tgcgtgctcactgctctttctgtcag 84
