miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02011011.1/10155-10027 39946:Oryza sativa
           Indica Group
          Length = 129

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 10  gtactccctccgtcctataata 31
           ||||||||||||||||||||||
Sbjct: 126 gtactccctccgtcctataata 105





>RF00906;MIR1122;AAAA02000785.1/4986-5079 39946:Oryza sativa
          Indica Group
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtactccctccgtcctataata 31
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctataata 25





>RF00906;MIR1122;AAAA02021973.1/23033-22904 39946:Oryza sativa
          Indica Group
          Length = 130

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtactccctccgtcctataata 31
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctataata 25





>RF00906;MIR1122;AAAA02014561.1/46160-46023 39946:Oryza sativa
           Indica Group
          Length = 138

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 10  gtactccctccgtcctataata 31
           ||||||||||||||||||||||
Sbjct: 135 gtactccctccgtcctataata 114





>RF00906;MIR1122;AL606688.3/14952-14867 39947:Oryza sativa
          Japonica Group
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtactccctccgtcctataata 31
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctataata 25





>RF00906;MIR1122;AACV01016185.1/13649-13778 39947:Oryza sativa
          Japonica Group
          Length = 130

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtactccctccgtcctataata 31
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctataata 25