miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 123 bits (62), Expect = 1e-27
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 151 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 210
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagcttcattaccttgta---ttagatcct 159
Query: 211 tgtttggattgaagggagctctacatct 238
||||||||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctctacatct 187
Score = 121 bits (61), Expect = 5e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 68
Query: 98 ggataccacagccctat 114
|||| ||||||||||||
Sbjct: 69 ggatcccacagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 1e-21
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 42 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 101
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 102 accacagcccta 113
|||||||||||
Sbjct: 73 tccacagcccta 84
Score = 65.9 bits (33), Expect = 3e-10
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 156 taggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttgttt 215
|||||||| || ||||||||||| |||||| ||||||| || | ||| ||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacccta--agctta-atccttgttt 164
Query: 216 ggattgaagggagctctaca 235
||||||||||||||||||||
Sbjct: 165 ggattgaagggagctctaca 184
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 103 bits (52), Expect = 1e-21
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||
Sbjct: 9 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 68
Query: 98 ggataccacagccctatccc 117
|||| |||||||||||||||
Sbjct: 69 ggatcccacagccctatccc 88
Score = 93.7 bits (47), Expect = 1e-18
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 151 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 210
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 159
Query: 211 tgtttggattgaagggagctctaca 235
|||||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctctaca 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 91.7 bits (46), Expect = 5e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 98 ggataccacagccctatc 115
|||| |||||| ||||||
Sbjct: 69 ggat-ccacagtcctatc 85
Score = 69.9 bits (35), Expect = 2e-11
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 153 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 212
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 213 tttggattgaagggagctcta 233
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 83.8 bits (42), Expect = 1e-15
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 42 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 101
||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 102 accacagccctatc 115
|||||||||||||
Sbjct: 61 cccacagccctatc 74
Score = 67.9 bits (34), Expect = 7e-11
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 165 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 224
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 157
Query: 225 ggagctct 232
||||||||
Sbjct: 158 ggagctct 165
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 83.8 bits (42), Expect = 1e-15
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||| ||| ||||| |||| |||||||||||||||| ||||
Sbjct: 9 agtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctat 68
Query: 98 ggataccacagccctatc 115
|||| || ||||||||||
Sbjct: 69 ggattcctcagccctatc 86
Score = 50.1 bits (25), Expect = 2e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 200 tgttagatccttgtttggattgaagggagctctacat 236
|||| |||| || ||||||||||||||||||||||||
Sbjct: 155 tgtttgatcattttttggattgaagggagctctacat 191
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
||||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatct 197
