miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 gcattacagggcaaaacctccattggcatgcagccacactaagat 47
||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 5 gcattacagggcaaaaccttcattggcatgctgccagactaagat 49
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 64 gcattcctatagtgtgctccatgccaaaggagatttgcccggc 106
|||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 57 gcattcctatcgtgtgcatcatgccaaaggagatttgcccggc 99
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttgcattacagggcaaaacctccattggcatgcagccac 39
|||||||||||||||| ||||||||||||| ||||||||
Sbjct: 3 ttgcattacagggcaagacctccattggcaggcagccac 41
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 attacagggcaaaacctccattggcatgcagc 36
|||| |||||||||||||||||||||||||||
Sbjct: 7 attatagggcaaaacctccattggcatgcagc 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 74 agtgtgctccatgccaaaggagatttgcccggcaa 108
||||||| | ||||||||| |||||||||||||||
Sbjct: 70 agtgtgcacaatgccaaagaagatttgcccggcaa 104
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 82 ccatgccaaaggagatttgcccggcaa 108
|||||||||||||||||||||||||||
Sbjct: 89 ccatgccaaaggagatttgcccggcaa 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 ttgcattacagggcaaaacctccattggcatgcagccac 39
|||||||||||||||| | |||||||||||||||||||
Sbjct: 3 ttgcattacagggcaag-cttccattggcatgcagccac 40
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 63 tgcattcctatagtgtgctccatgccaaaggagatttgcccggcaa 108
||||||| | |||||||| | ||||||||||||||||||||||||
Sbjct: 64 tgcattcttgtagtgtgccctctgccaaaggagatttgcccggcaa 109
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagatttgcccggcaa 108
||||||||||||||||||||||||
Sbjct: 64 tgccaaaggagatttgcccggcaa 87
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagatttgcccggcaa 108
||||||||||||||||||||||||
Sbjct: 79 tgccaaaggagatttgcccggcaa 102
>RF00445;mir-399;AASG02004610.1/1319-1202 3988:Ricinus communis
(castor bean)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tgcattacagggcaaaacctccattggcatg 32
||||||||||||||||| | |||||||||||
Sbjct: 4 tgcattacagggcaaaatcaccattggcatg 34
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 74 agtgtgctccatgccaaaggagatttgccc 103
|||||| ||| |||||||||||||||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgccc 105
