miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
           (castor bean)
          Length = 96

 Score =  119 bits (60), Expect = 1e-26
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-ca 87
           ||||||||||||||||||||||||||||||||||| |||||||||||||||  |  |  |
Sbjct: 1   cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60

                                               
Query: 88  aacacatgaatcgatcgataaacctctgcatccagc 123
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 61  aacgcatgaatcgatcgataaacctctgcatccagc 96




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
           (papaya)
          Length = 91

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaa 88
           |||||||||||||||||||||||||||||||||  ||| |||| |||||||  | |||| 
Sbjct: 1   cactggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatcacag 57

                                              
Query: 89  acacatgaatcgatcgataaacctctgcatccagc 123
           | |||||||||||||||||||||||||||||||||
Sbjct: 58  a-acatgaatcgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
           trichocarpa
          Length = 91

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 6/96 (6%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-a 87
           ||||||||||||||||||||||||||||||||||   ||||| ||||    ||||||| |
Sbjct: 1   cactggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacga 55

                                               
Query: 88  aacacatgaatcgatcgataaacctctgcatccagc 123
           || ||||||| |||||||||||||||||||||||||
Sbjct: 56  aaaacatgaaccgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 31 ctggaggcagcggttcatcgatctcttcctg 61
          |||||||||||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg 33



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 92  catgaatcgatcgataaacctctgcatccagc 123
           ||||||| ||||||||||||||||||||||||
Sbjct: 57  catgaatagatcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 81/95 (85%), Gaps = 6/95 (6%)
 Strand = Plus / Plus

                                                                       
Query: 29  cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaa 88
           |||||||||||||||||||||||||| ||||| || |||||| ||||    ||  ||| |
Sbjct: 1   cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacga 55

                                              
Query: 89  ac-acatgaatcgatcgataaacctctgcatccag 122
           || ||| ||| ||||||||||||||||||||||||
Sbjct: 56  acaacacgaaccgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
           (thale cress)
          Length = 91

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 95  gaatcgatcgataaacctctgcatccagc 123
           |||||||||||||||||||||||||||||
Sbjct: 63  gaatcgatcgataaacctctgcatccagc 91



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 ctggaggcagcggttcatcgatc 53
          |||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatc 25




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
           (barrel medic)
          Length = 90

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 91  acatgaatcgatcgataaacctctgcatccagc 123
           |||||||||| ||||||||||||||||||||||
Sbjct: 58  acatgaatcggtcgataaacctctgcatccagc 90



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
          ||||||| |||||||||||||||||| ||||||
Sbjct: 1  cactggatgcagcggttcatcgatctgttcctg 33




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
          ||||||| |||||||||||||||||||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 95  gaatcgatcgataaacctctgcatccagc 123
           |||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  gaatcgatcgataaacctctgcatccag 122
           ||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  gaatcgatcgataaacctctgcatccag 122
           ||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 95  gaatcgatcgataaacctctgcatccagc 123
           |||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133




>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
           Japonica Group
          Length = 117

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 95  gaatcgatcgataaacctctgcatccag 122
           |||||||||||||| |||||||||||||
Sbjct: 89  gaatcgatcgataagcctctgcatccag 116




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
          subsp. pekinensis
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 31 ctggaggcagcggttcatcgatctctt 57
          ||||||||||||||| |||||||||||
Sbjct: 3  ctggaggcagcggttgatcgatctctt 29