miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
           (papaya)
          Length = 138

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 134 atctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||||||||||
Sbjct: 110 atctcggaccaggcttcattcccgtcaac 138



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 atgggaatgttgtttggctcgaggt 45
          |||||||||||||||||||||||||
Sbjct: 5  atgggaatgttgtttggctcgaggt 29




>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
          (barrel medic)
          Length = 170

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 17 gttgatgggaatgttgtttggctcgaggt 45
          |||||||||||||||||||||||||||||
Sbjct: 1  gttgatgggaatgttgtttggctcgaggt 29



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcc 163




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 134 atctcggaccaggcttcattcccgtcaac 162
           ||||||||||||||||||||||| |||||
Sbjct: 97  atctcggaccaggcttcattcccctcaac 125




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 134 atctcggaccaggcttcattcccgtcaac 162
           ||||||||||||||||||||||| |||||
Sbjct: 91  atctcggaccaggcttcattcccctcaac 119




>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 135 tctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||| |||||
Sbjct: 73  tctcggaccaggcttcattcccctcaac 100



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 24 ggaatgttgtttggctcgaggt 45
          ||||||||||||||||||||||
Sbjct: 8  ggaatgttgtttggctcgaggt 29




>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
           (barrel medic)
          Length = 104

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 133 aatctcggaccaggcttcattccc 156
           ||||||||||||||||||||||||
Sbjct: 75  aatctcggaccaggcttcattccc 98




>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
          Length = 157

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 135 tctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||| |||||
Sbjct: 130 tctcggaccaggcttcattcccctcaac 157




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 134 atctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||||| ||||
Sbjct: 69  atctcggaccaggcttcattcccctcaa 96




>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
           (sorghum)
          Length = 98

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 135 tctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||| |||||
Sbjct: 71  tctcggaccaggcttcattcccctcaac 98




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
           (sorghum)
          Length = 97

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 134 atctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||||| ||||
Sbjct: 69  atctcggaccaggcttcattcccctcaa 96




>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
           Japonica Group
          Length = 87

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 135 tctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||| |||||
Sbjct: 60  tctcggaccaggcttcattcccctcaac 87




>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
           Indica Group
          Length = 87

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 135 tctcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||||| |||||
Sbjct: 60  tctcggaccaggcttcattcccctcaac 87




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 134 atctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||||| ||||
Sbjct: 75  atctcggaccaggcttcattcccctcaa 102




>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
          Length = 94

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 66  atctcggaccaggcttcattccc 88




>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
          Length = 92

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 64  atctcggaccaggcttcattccc 86




>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
           (castor bean)
          Length = 94

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 66  atctcggaccaggcttcattccc 88




>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
           (barrel medic)
          Length = 92

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 64  atctcggaccaggcttcattccc 86




>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 62  atctcggaccaggcttcattccc 84




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 86  atctcggaccaggcttcattccc 108




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 96  atctcggaccaggcttcattccc 118




>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
          Length = 212

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 186 atctcggaccaggcttcattccc 208




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 90  atctcggaccaggcttcattccc 112




>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
           (sorghum)
          Length = 191

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 163 atctcggaccaggcttcattccc 185




>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 160

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 132 atctcggaccaggcttcattccc 154




>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
           Indica Group
          Length = 180

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 152 atctcggaccaggcttcattccc 174




>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
           Group
          Length = 179

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 151 atctcggaccaggcttcattccc 173




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 134 atctcggaccaggcttcattccc 156
           |||||||||||||||||||||||
Sbjct: 93  atctcggaccaggcttcattccc 115




>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
           cotton)
          Length = 113

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 85  atctcggaccaggcttcattcc 106




>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 98  tctcggaccaggcttcattccc 119




>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
           pekinensis
          Length = 109

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 84  tcggaccaggcttcattcccctcaac 109




>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
           pekinensis
          Length = 87

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 60  tctcggaccaggcttcattccc 81




>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
           cress)
          Length = 98

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 73  tcggaccaggcttcattcccctcaac 98




>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
           (thale cress)
          Length = 118

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 91  tctcggaccaggcttcattccc 112




>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
           cress)
          Length = 111

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 84  tctcggaccaggcttcattccc 105




>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
           cress)
          Length = 101

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 76  tcggaccaggcttcattcccctcaac 101




>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
          Length = 317

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 289 atctcggaccaggcttcattcc 310




>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
          Length = 88

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 136 ctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||| ||||
Sbjct: 62  ctcggaccaggcttcattcccctcaa 87




>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
          Length = 324

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 296 atctcggaccaggcttcattcc 317




>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
           trichocarpa
          Length = 97

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 70  tctcggaccaggcttcattccc 91




>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 71  tcggaccaggcttcattcccctcaac 96




>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
          Length = 94

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 136 ctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||| ||||
Sbjct: 68  ctcggaccaggcttcattcccctcaa 93




>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
           (barrel medic)
          Length = 107

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 80  tctcggaccaggcttcattccc 101




>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
           (barrel medic)
          Length = 181

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 153 atctcggaccaggcttcattcc 174




>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
          Length = 166

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 138 atctcggaccaggcttcattcc 159




>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
          Length = 103

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 76  tctcggaccaggcttcattccc 97




>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 65  tcggaccaggcttcattcccctcaac 90




>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
          Length = 122

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 94  atctcggaccaggcttcattcc 115




>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
          Length = 150

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 136 ctcggaccaggcttcattcccgtcaa 161
           ||||||||||||||||||||| ||||
Sbjct: 124 ctcggaccaggcttcattcccctcaa 149




>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 tcggaccaggcttcattcccgtcaac 162
           |||||||||||||||||||| |||||
Sbjct: 65  tcggaccaggcttcattcccctcaac 90




>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
          Length = 93

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tctcggaccaggcttcattccc 156
           ||||||||||||||||||||||
Sbjct: 66  tctcggaccaggcttcattccc 87




>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 atctcggaccaggcttcattcc 155
           ||||||||||||||||||||||
Sbjct: 107 atctcggaccaggcttcattcc 128