miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score =  135 bits (68), Expect = 2e-31
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                       
Query: 31  aagactgggaacaggcagagcatggatggagctattaatggaaatatctgttttggctcc 90
           ||||| |||||||||||||||||||||||||||| |||  ||| ||  ||||||||||| 
Sbjct: 16  aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 75

                                                       
Query: 91  acccatgcactgcctcttccctggcttgtggctcctccttttct 134
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 76  acccatgcactgcctcttccctggcttgtggctcttccttttct 119




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score =  103 bits (52), Expect = 6e-22
 Identities = 83/92 (90%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 27  gacaaagactgggaacaggcagagcatggatggagctattaatggaaat-atctgttttg 85
           |||||||||||||||||||||| |||||||||| |||| |||  ||||  ||||||||||
Sbjct: 12  gacaaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttg 71

                                           
Query: 86  gctccacccatgcactgcctcttccctggctt 117
           |||| |||| ||||||||||||||||||||||
Sbjct: 72  gctctacccctgcactgcctcttccctggctt 103




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 78  ctgttttggctccacccatgcactgcctcttccctggctt 117
           ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 67  ctgttgtggctccactcatgcactgcctcttccctggctt 106




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 78  ctgttttggctccacccatgcactgcctcttccctggct 116
           ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 70  ctgtttttgctctacccatgcactgcctcttccctggct 108




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 81  ttttggctccacccatgcactgcctcttccctggct 116
           ||||| ||| ||||||||||||||||||||||||||
Sbjct: 73  ttttgtctctacccatgcactgcctcttccctggct 108




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 76  atctgttttggctccacccatgcactgcctcttccctggct 116
           ||||||| ||||| | | |||||||||||||||||||||||
Sbjct: 99  atctgttgtggctacgctcatgcactgcctcttccctggct 139



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 27 gacaaagactgggaacaggcagagcatggatggagctat 65
          ||||||| |||||||||||||| ||| | ||||||||||
Sbjct: 13 gacaaaggctgggaacaggcagggcacgaatggagctat 51




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 37 gggaacaggcagagcatggatggagctat 65
          ||||| |||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagctat 51



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttggctccacccatgcactgcctcttccctggc 115
           |||| |||||| || ||||||||||||||||||||||
Sbjct: 82  tgttgtggctctactcatgcactgcctcttccctggc 118




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 81  ttttggctccacccatgcactgcctcttccctggct 116
           |||||| || |||| |||||||||||||||||||||
Sbjct: 71  ttttggttctacccctgcactgcctcttccctggct 106



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 35 ctgggaacaggcagagcatggatggag 61
          ||||||| |||||||||||||||||||
Sbjct: 21 ctgggaagaggcagagcatggatggag 47