miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score =  103 bits (52), Expect = 6e-22
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                       
Query: 22  aagactgggaacaggcagagcatgggtggaactattaacacaagtatctgttttagcacc 81
           ||||| ||||||||||||||||||| |||| ||| ||||| |||||  |||||| || | 
Sbjct: 16  aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 75

                                                       
Query: 82  acccatgcactgcctcttccctggcttgcgggtcttctttttct 125
           |||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 76  acccatgcactgcctcttccctggcttgtggctcttccttttct 119




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 101/118 (85%), Gaps = 1/118 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   agaaagagacggacaaagactgggaacaggcagagcatgggtggaactattaacacaagt 66
           ||||| |||| |||||||||||||||||||||| |||||| |||  ||| ||||| ||  
Sbjct: 1   agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaa 60

                                                                     
Query: 67  -atctgttttagcaccacccatgcactgcctcttccctggcttgcgggtcttcttttt 123
            ||||||||| || | |||| |||||||||||||||||||||| ||| ||||||||||
Sbjct: 61  catctgttttggctctacccctgcactgcctcttccctggcttccggttcttcttttt 118




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 69  ctgttttagcaccacccatgcactgcctcttccctggct 107
           ||||||| || | ||||||||||||||||||||||||||
Sbjct: 70  ctgtttttgctctacccatgcactgcctcttccctggct 108




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 82  acccatgcactgcctcttccctggct 107
           ||||||||||||||||||||||||||
Sbjct: 83  acccatgcactgcctcttccctggct 108




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  ccacccatgcactgcctcttccctggctt 108
           |||| ||||||||||||||||||||||||
Sbjct: 78  ccactcatgcactgcctcttccctggctt 106




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  catgcactgcctcttccctggct 107
           |||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 82  acccatgcactgcctcttccctggct 107
           |||| |||||||||||||||||||||
Sbjct: 81  acccctgcactgcctcttccctggct 106




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  catgcactgcctcttccctggc 106
           ||||||||||||||||||||||
Sbjct: 97  catgcactgcctcttccctggc 118