miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 148 tgcactgcctcttccctggttctctctt 175
||||||||||||||||||| ||||||||
Sbjct: 86 tgcactgcctcttccctggctctctctt 113
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 144 ctcatgcactgcctcttccctgg 166
|||||||||||||||||||||||
Sbjct: 81 ctcatgcactgcctcttccctgg 103
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 144 ctcatgcactgcctcttccctgg 166
|||||||||||||||||||||||
Sbjct: 115 ctcatgcactgcctcttccctgg 137
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 144 ctcatgcactgcctcttccctgg 166
|||||||||||||||||||||||
Sbjct: 95 ctcatgcactgcctcttccctgg 117
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 146 catgcactgcctcttccctggttctctctt 175
||||||||||||||||||||| || |||||
Sbjct: 86 catgcactgcctcttccctggctccctctt 115
