miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          |||||||||||||||||||||||||||||||
Sbjct: 1  tgccatgcttttccacagctttcttgaactt 31



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 89  aagttcaagaaagctgtgggaaa 111
           |||||||||||||||||||||||
Sbjct: 74  aagttcaagaaagctgtgggaaa 96



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 3   gccatgcttttccacagctttcttgaactt 32
           |||||| ||| |||||||||||||||||||
Sbjct: 103 gccatggtttcccacagctttcttgaactt 74




>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
          trichocarpa
          Length = 148

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
           trichocarpa
          Length = 105

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 1   ctgccatgcttttccacagctttcttgaactt 32
           |||||||| |||||||||||||||||||||||
Sbjct: 105 ctgccatgtttttccacagctttcttgaactt 74



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 89  aagttcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||||| |||| |||||
Sbjct: 74  aagttcaagaaagctgtggaaaaacatggc 103




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 89  aagttcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||||||| || |||||
Sbjct: 102 aagttcaagaaagctgtgggagaacatggc 131




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tcaagaaagctgtgggaaaatatggc 118
           ||||||||||||||||| ||||||||
Sbjct: 77  tcaagaaagctgtgggagaatatggc 102




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tcaagaaagctgtgggaaaatatggc 118
           |||||||||| |||||||||||||||
Sbjct: 81  tcaagaaagccgtgggaaaatatggc 106




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 5  catgcttttccacagctttcttgaact 31
          |||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaact 30




>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
          (sorghum)
          Length = 144

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          |||||||| ||||||||||||||||||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaactt 31




>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  tgccatgcttttccacagctttcttgaactt 32
          |||||||| ||||||||||||||||||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaactt 31




>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  cttttccacagctttcttgaactttc 34
          ||||||||||||||||||||||||||
Sbjct: 8  cttttccacagctttcttgaactttc 33



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 87  gaaagttcaagaaagctgtgggaaaatatg 116
           ||||||||||||||||||||| ||| ||||
Sbjct: 33  gaaagttcaagaaagctgtggaaaagtatg 4




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  cttttccacagctttcttgaacttt 33
          |||||||||||||||||||||||||
Sbjct: 8  cttttccacagctttcttgaacttt 32



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 4   ccatgcttttccacagctttcttgaacttt 33
           ||||||||| |||||| |||||||||||||
Sbjct: 105 ccatgctttcccacagttttcttgaacttt 76




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          |||| |||||||||||||||||||||||
Sbjct: 4  catgtttttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
          trichocarpa
          Length = 171

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          |||| |||||||||||||||||||||||
Sbjct: 4  catgtttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 88  aaagttcaagaaagctgtgggaaaatatgg 117
           |||||||||||||| |||||||||| ||||
Sbjct: 229 aaagttcaagaaagttgtgggaaaagatgg 258




>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
          Length = 175

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 89  aagttcaagaaagctgtgggaaaatatg 116
           |||||||||||||| |||||||||||||
Sbjct: 144 aagttcaagaaagccgtgggaaaatatg 171




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 89  aagttcaagaaagctgtgggaaaatatg 116
           ||||||||||||||||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaaatatg 4



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ttttccacagctttcttgaactt 32
          |||||||||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaactt 31