miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAQB01006223.1/53904-53972 7260:Drosophila
willistoni
Length = 69
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 6 tcgtcatcatcttcatcatcatcttcagcagca 38
||||||||||| ||||||||||| |||||||||
Sbjct: 36 tcgtcatcatcatcatcatcatcatcagcagca 4
>RF01059;mir-598;AAVX01556641.1/25-119 7868:Callorhinchus milii
(ghost shark)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttca 32
||||||||||||||||||||||||
Sbjct: 36 tcatcatcttcatcatcatcttca 13
>RF01059;mir-598;AAQQ01140903.1/1017-958 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 60
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 gtcatcatcttcatcatcatcttcagc 34
|||||||||||||| ||||||||||||
Sbjct: 34 gtcatcatcttcattatcatcttcagc 8
>RF01059;mir-598;AAQA01001570.1/1333-1262 6279:Brugia malayi
Length = 72
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tcgtcatcatcttcatcatcat 27
||||||||||||||||||||||
Sbjct: 39 tcgtcatcatcttcatcatcat 18
>RF01059;mir-598;AASC02036200.1/12772-12677 6500:Aplysia
californica (California sea hare)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 45 tcatcatcatcatcatcatcatcagcagca 16
>RF01059;mir-598;AASC02021237.1/6708-6803 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 39 tcatcatcatcatcatcatcatcagcagca 10
>RF01059;mir-598;AASC02046228.1/7927-8015 6500:Aplysia californica
(California sea hare)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 57 tcatcatcatcatcatcatcatcagcagca 86
>RF01059;mir-598;AASC02044983.1/4497-4594 6500:Aplysia californica
(California sea hare)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 39 tcatcatcatcatcatcatcatcagcagca 10
>RF01059;mir-598;CAAB01007162.1/4962-5054 31033:Takifugu rubripes
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 tcgtcatcatcttcatcatcatcttcagca 35
||||||||||| ||||||||||| ||||||
Sbjct: 57 tcgtcatcatcatcatcatcatcatcagca 28
>RF01059;mir-598;AAQB01006639.1/135864-135943 7260:Drosophila
willistoni
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 30 tcatcatcatcatcatcatcgtcagcagca 1
>RF01059;mir-598;AAQB01006881.1/153820-153957 7260:Drosophila
willistoni
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tcatcatcttcatcatcatcttcagcagca 38
|||||||| ||||||||||| |||||||||
Sbjct: 30 tcatcatcatcatcatcatcatcagcagca 1
>RF01059;mir-598;AANI01016597.1/18315-18448 7244:Drosophila
virilis
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 tcgtcatcatcttcatcatcatcttcagca 35
||||||||||| ||||||||||| ||||||
Sbjct: 39 tcgtcatcatcatcatcatcatcatcagca 10
