miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAHY01124327.1/2124-2030 10090:Mus musculus (house
mouse)
Length = 95
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
|||||||||||||||||||||||||||
Sbjct: 48 tcgtcgtcgtcgtcatcatcatcatcg 74
>RF01059;mir-598;AABR04033669.1/20063-20142 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 33 tcgtcgtcgtcgtcatcatcatcatc 8
>RF01059;mir-598;AAHX01032677.1/13971-14043 10116:Rattus norvegicus
(Norway rat)
Length = 73
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 45 tcgtcgtcgtcgtcatcatcatcatc 20
>RF01059;mir-598;AABR04154735.1/655-538 10116:Rattus norvegicus
(Norway rat)
Length = 118
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 74 tcgtcgtcgtcgtcatcatcatcatc 99
>RF01059;mir-598;AAHX01322615.1/321-203 10116:Rattus norvegicus
(Norway rat)
Length = 119
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 51 tcgtcgtcgtcgtcatcatcatcatc 26
>RF01059;mir-598;AAHX01018351.1/12195-12100 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 42 tcgtcgtcgtcgtcatcatcatcatc 17
>RF01059;mir-598;AAZO01002574.1/40305-40442 121224:Pediculus humanus
corporis (human body louse)
Length = 138
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 112 tcgtcgtcgtcgtcatcatcatcatc 137
>RF01059;mir-598;AAZO01004228.1/22177-22042 121224:Pediculus humanus
corporis (human body louse)
Length = 136
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 104 tcgtcgtcgtcgtcatcatcatcatc 129
>RF01059;mir-598;ABJB010280147.1/6760-6855 6945:Ixodes scapularis
(black-legged tick)
Length = 96
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
||||||||||||||||||||||||||
Sbjct: 70 tcgtcgtcgtcgtcatcatcatcatc 95
>RF01059;mir-598;AAQB01006639.1/135864-135943 7260:Drosophila
willistoni
Length = 80
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 278 cgtcgtcgtcgtcatcatcatcatc 302
|||||||||||||||||||||||||
Sbjct: 47 cgtcgtcgtcgtcatcatcatcatc 23
>RF01059;mir-598;ABJB010822164.1/13-128 6945:Ixodes scapularis
(black-legged tick)
Length = 116
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcat 301
|||||||||||||||||||||||||
Sbjct: 87 tcgtcgtcgtcgtcatcatcatcat 111
>RF01059;mir-598;AASC02000361.1/8816-8735 6500:Aplysia californica
(California sea hare)
Length = 82
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
||||||||||| |||||||||||||||
Sbjct: 53 tcgtcgtcgtcatcatcatcatcatcg 79
>RF01059;mir-598;AABR04017537.1/6877-6788 10116:Rattus norvegicus
(Norway rat)
Length = 90
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 277 tcgtcgtcgtcgtcatcatcatc 299
|||||||||||||||||||||||
Sbjct: 61 tcgtcgtcgtcgtcatcatcatc 83
>RF01059;mir-598;AAWZ01040080.1/13083-13148 28377:Anolis
carolinensis (green anole)
Length = 66
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 280 tcgtcgtcgtcatcatcatcatc 302
|||||||||||||||||||||||
Sbjct: 39 tcgtcgtcgtcatcatcatcatc 17
>RF01059;mir-598;AAWZ01021495.1/81250-81158 28377:Anolis
carolinensis (green anole)
Length = 93
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 280 tcgtcgtcgtcatcatcatcatc 302
|||||||||||||||||||||||
Sbjct: 64 tcgtcgtcgtcatcatcatcatc 86
>RF01059;mir-598;AAGE02028713.1/58067-58135 7159:Aedes aegypti
(yellow fever mosquito)
Length = 69
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
||||||||||| |||||||||||||||
Sbjct: 27 tcgtcgtcgtcatcatcatcatcatcg 1