miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAHY01124327.1/2124-2030 10090:Mus musculus (house
           mouse)
          Length = 95

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
           |||||||||||||||||||||||||||
Sbjct: 48  tcgtcgtcgtcgtcatcatcatcatcg 74




>RF01059;mir-598;AABR04033669.1/20063-20142 10116:Rattus norvegicus
           (Norway rat)
          Length = 80

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 33  tcgtcgtcgtcgtcatcatcatcatc 8




>RF01059;mir-598;AAHX01032677.1/13971-14043 10116:Rattus norvegicus
           (Norway rat)
          Length = 73

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 45  tcgtcgtcgtcgtcatcatcatcatc 20




>RF01059;mir-598;AABR04154735.1/655-538 10116:Rattus norvegicus
           (Norway rat)
          Length = 118

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 74  tcgtcgtcgtcgtcatcatcatcatc 99




>RF01059;mir-598;AAHX01322615.1/321-203 10116:Rattus norvegicus
           (Norway rat)
          Length = 119

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 51  tcgtcgtcgtcgtcatcatcatcatc 26




>RF01059;mir-598;AAHX01018351.1/12195-12100 10116:Rattus norvegicus
           (Norway rat)
          Length = 96

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 42  tcgtcgtcgtcgtcatcatcatcatc 17




>RF01059;mir-598;AAZO01002574.1/40305-40442 121224:Pediculus humanus
           corporis (human body louse)
          Length = 138

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 112 tcgtcgtcgtcgtcatcatcatcatc 137




>RF01059;mir-598;AAZO01004228.1/22177-22042 121224:Pediculus humanus
           corporis (human body louse)
          Length = 136

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 104 tcgtcgtcgtcgtcatcatcatcatc 129




>RF01059;mir-598;ABJB010280147.1/6760-6855 6945:Ixodes scapularis
           (black-legged tick)
          Length = 96

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 277 tcgtcgtcgtcgtcatcatcatcatc 302
           ||||||||||||||||||||||||||
Sbjct: 70  tcgtcgtcgtcgtcatcatcatcatc 95




>RF01059;mir-598;AAQB01006639.1/135864-135943 7260:Drosophila
           willistoni
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 278 cgtcgtcgtcgtcatcatcatcatc 302
           |||||||||||||||||||||||||
Sbjct: 47  cgtcgtcgtcgtcatcatcatcatc 23




>RF01059;mir-598;ABJB010822164.1/13-128 6945:Ixodes scapularis
           (black-legged tick)
          Length = 116

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 277 tcgtcgtcgtcgtcatcatcatcat 301
           |||||||||||||||||||||||||
Sbjct: 87  tcgtcgtcgtcgtcatcatcatcat 111




>RF01059;mir-598;AASC02000361.1/8816-8735 6500:Aplysia californica
           (California sea hare)
          Length = 82

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
           ||||||||||| |||||||||||||||
Sbjct: 53  tcgtcgtcgtcatcatcatcatcatcg 79




>RF01059;mir-598;AABR04017537.1/6877-6788 10116:Rattus norvegicus
           (Norway rat)
          Length = 90

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 277 tcgtcgtcgtcgtcatcatcatc 299
           |||||||||||||||||||||||
Sbjct: 61  tcgtcgtcgtcgtcatcatcatc 83




>RF01059;mir-598;AAWZ01040080.1/13083-13148 28377:Anolis
           carolinensis (green anole)
          Length = 66

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 280 tcgtcgtcgtcatcatcatcatc 302
           |||||||||||||||||||||||
Sbjct: 39  tcgtcgtcgtcatcatcatcatc 17




>RF01059;mir-598;AAWZ01021495.1/81250-81158 28377:Anolis
           carolinensis (green anole)
          Length = 93

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 280 tcgtcgtcgtcatcatcatcatc 302
           |||||||||||||||||||||||
Sbjct: 64  tcgtcgtcgtcatcatcatcatc 86




>RF01059;mir-598;AAGE02028713.1/58067-58135 7159:Aedes aegypti
           (yellow fever mosquito)
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 277 tcgtcgtcgtcgtcatcatcatcatcg 303
           ||||||||||| |||||||||||||||
Sbjct: 27  tcgtcgtcgtcatcatcatcatcatcg 1