miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 78/89 (87%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgtgcctggctccctgtatgccacacgtagagacccatctgttt--atgatcggcta-ct 65
          |||||||||||||||||||||||||||||||||||  ||  |||    ||| |||||  |
Sbjct: 2  tgtgcctggctccctgtatgccacacgtagagaccactccctttcccggattggctattt 61

                                       
Query: 66 gcgggtggcgtgcgaggagccaagcatac 94
          |||||||||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagcatac 90




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 74/87 (85%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgcctggctccctgtatgccacacgtagagacccatct---gtttatgatcggctactgc 67
          ||||||||||||||||||||||| | | ||||| ||||   ||||  ||| ||||  |||
Sbjct: 4  tgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgttgc 63

                                     
Query: 68 gggtggcgtgcgaggagccaagcatac 94
           ||||||||||||||||||||||||||
Sbjct: 64 cggtggcgtgcgaggagccaagcatac 90




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 61 ctactgcgggtggcgtgcgaggagccaagcatac 94
          |||| |||||||||||||||||||||||||||||
Sbjct: 57 ctacggcgggtggcgtgcgaggagccaagcatac 90



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcatac 94
          ||||| ||| ||||||||||||||||||||||||||
Sbjct: 55 ggctattgccggtggcgtgcgaggagccaagcatac 90



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccaca 33
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgtgcctggctccctgtatgccacacgtagagacccatctgtttatgatcggctactgcg 68
          |||||||||||||||||||||||||| | || ||| |||| |   |||| ||  |||| |
Sbjct: 2  tgtgcctggctccctgtatgccacacatggacaccaatctttgggtgattggtgactgtg 61

                                  
Query: 69 ggtggcgtgcgaggagccaagcat 92
          ||||| |||| |||||||||||||
Sbjct: 62 ggtggtgtgcaaggagccaagcat 85




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
           (sorghum)
          Length = 106

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 61  ctactgcgggtggcgtgcgaggagccaagcat 92
           ||||||||| ||||||||||||||||||||||
Sbjct: 73  ctactgcggatggcgtgcgaggagccaagcat 104



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 61  ctactgcgggtggcgtgcgaggagccaagcat 92
           ||||||||| ||||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagcat 134



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcata 93
          |||| |||| |||||||||||||||||||||||||
Sbjct: 55 ggctgctgccggtggcgtgcgaggagccaagcata 89




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgtgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccacac 27




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgtgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccacac 27




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgtgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccacac 27




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 11 tgcctggctccctgtatgccacacgtaga 39
          ||||||||||||||||||||||| |||||
Sbjct: 4  tgcctggctccctgtatgccacaagtaga 32




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 gtgcctggctccctgtatgccacac 34
          |||||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccacac 27




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 69 ggtggcgtgcgaggagccaagcat 92
          ||||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagcat 86



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccaca 33
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 gtgcctggctccctgtatgccaca 33
          ||||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccaca 26




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccaca 33
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 gtgcctggctccctgtatgccac 32
          |||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccac 25




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 63 actgcgggtggcgtgcgaggagccaa 88
          ||||||| ||||||||||||||||||
Sbjct: 72 actgcggatggcgtgcgaggagccaa 97




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25