miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730894.1/50807-50703 15368:Brachypodium
distachyon
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 14 tactccctccgatcctaaataaatgtcgcagttttgaa 51
|||| |||||||||| |||||| |||||||||||||||
Sbjct: 5 tactacctccgatccaaaataagtgtcgcagttttgaa 42
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 14 tactccctccgatcctaaataaatgtcgcagttttgaactaa 55
|||| |||||||||| |||||| |||| ||||||||||||||
Sbjct: 101 tactgcctccgatccaaaataagtgtctcagttttgaactaa 60
>RF00906;MIR1122;EU730895.1/40632-40541 15368:Brachypodium
distachyon
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagtactccctccgatcctaaat 33
|||||||||||||||||||||||
Sbjct: 2 tagtactccctccgatcctaaat 24
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tagtactccctccgatcctaaataaatgtc 40
|||||||||||||||||| |||||| ||||
Sbjct: 93 tagtactccctccgatccaaaataagtgtc 64
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 agtactccctccgatcctaaat 33
||||||||||||||||||||||
Sbjct: 3 agtactccctccgatcctaaat 24
