miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 77.8 bits (39), Expect = 1e-13
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactga 43
Score = 67.9 bits (34), Expect = 9e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
||||||||||||||||||||||||| ||||||||||||
Sbjct: 117 tcccgccttgcatcaactgaatcggagaccgcggtgaa 154
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 77.8 bits (39), Expect = 1e-13
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactga 43
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
|||||||||||||||||||||||| ||||| ||||||
Sbjct: 118 tcccgccttgcatcaactgaatcgaagaccggggtgaa 155
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 69.9 bits (35), Expect = 2e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactga 43
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatc 339
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 69.9 bits (35), Expect = 2e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactga 43
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
||||||||||||||||||||||||| | ||||||||||
Sbjct: 141 tcccgccttgcatcaactgaatcggaggccgcggtgaa 178
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 67.9 bits (34), Expect = 9e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 tcccgccttgcatcaactgaatcggagaccgcggtgaa 75
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 67.9 bits (34), Expect = 9e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaat 355
||||||||||||||||||||||||| | |||||||||||
Sbjct: 83 tcccgccttgcatcaactgaatcggaggccgcggtgaat 121
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 65.9 bits (33), Expect = 4e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 ggtctctaattcgcttggtgcaggtcgggaactgact 51
|||||||||||||||||||||||||||||||| ||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccgact 45
Score = 58.0 bits (29), Expect = 9e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtga 353
||||||||||||||||||||||||| ||| |||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggagacggcggtga 145
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
|||||||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcaggtcgggaactga 43
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
|||||||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactga 43
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
||||||||||||||||||||||||| | ||| ||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggaggccgaggtgaa 135
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
|||||||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactga 43
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactga 43
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcgg 123
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactga 43
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactga 43
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcgg 122
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactga 43
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 315 gttcccgccttgcatcaactgaatcgg 341
|||||||| ||||||||||||||||||
Sbjct: 90 gttcccgctttgcatcaactgaatcgg 116
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaactga 49
|||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactga 43
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatc 339
|||||||||||||||||||||||
Sbjct: 71 tcccgccttgcatcaactgaatc 93
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaact 47
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcgg 123
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 100 tcccgccttgcatcaactgaatcgg 124
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 96 tcccgccttgcatcaactgaatcgg 120
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaact 47
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcgg 123
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 97 tcccgccttgcatcaactgaatcgg 121
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 317 tcccgccttgcatcaactgaatcgg 341
|||||||||||||||||||||||||
Sbjct: 103 tcccgccttgcatcaactgaatcgg 127
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctctaattcgcttggtgcaggtcgggaac 46
|||| ||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
