miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 53 aatttggatgaacctatatactaaatagtgtctagattcatc 94
|||||||| ||| ||||||| |||||||||||||||| ||||
Sbjct: 45 aatttggacgaatctatatattaaatagtgtctagatacatc 86
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 12 ctactccctctgtcccataataaatgtttcagatttgtcaaaatttggat 61
|||||||||| |||| |||| | |||| ||| ||||||||||||||||||
Sbjct: 4 ctactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggat 53
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 attctactccctctgtcccataata 33
|||||||||||||||||||||||||
Sbjct: 91 attctactccctctgtcccataata 67
>RF00906;MIR1122;AK251244.1/665-573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ttctactccctctgtcccataata 33
||||||||||||||||||||||||
Sbjct: 92 ttctactccctctgtcccataata 69
>RF00906;MIR1122;AP004680.3/59671-59809 39947:Oryza sativa
Japonica Group
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tctactccctctgtcccataata 33
|||||||||||||||||||||||
Sbjct: 3 tctactccctctgtcccataata 25
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 44 atttgtcaaaatttggatgaacctatatactaaatagtgtctagattcatctaaattttg 103
||||||| ||| |||||| |||||||||||||| ||||||||| ||| || ||||||
Sbjct: 101 atttgtccaaaaatggatgtacctatatactaaaacatgtctagatacatatatattttg 42
Query: 104 aaaaat 109
| ||||
Sbjct: 41 acaaat 36
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 90 ctactccctctgtcccataata 69
>RF00906;MIR1122;AAAA02005262.1/2781-2672 39946:Oryza sativa
Indica Group
Length = 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctctgtcccataata 25
>RF00906;MIR1122;AL606688.3/14952-14867 39947:Oryza sativa
Japonica Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 83 ctactccctctgtcccataata 62
>RF00906;MIR1122;AACV01007837.1/4719-4874 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 153 ctactccctctgtcccataata 132
>RF00906;MIR1122;AP008212.1/7989879-7989724 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctctgtcccataata 25
>RF00906;MIR1122;AP003746.2/12557-12407 39947:Oryza sativa Japonica
Group
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 148 ctactccctctgtcccataata 127
>RF00906;MIR1122;AP004190.3/105219-105064 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctctgtcccataata 33
||||||||||||||||||||||
Sbjct: 153 ctactccctctgtcccataata 132
